RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 TMCO4Q5TGY1 634 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 SASS6Q6UVJ0 657 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 MYCBPQ99417 103 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-206ENST00000367253 MKL2Q9ULH7 1088 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 POTEJP0CG39 1038 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 CCDC82Q8N4S0 544 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 TSPYL2Q9H2G4 693 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-206ENST00000367253 CEP126Q9P2H0 1117 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 MYO6Q9UM54 1294 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 ANKRD30BQ9BXX2 1392 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 FCHSD2O94868 740 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 HSPA5P11021 654 aaKnown RBP10.09□□□□□ -0.79
SYNE1-206ENST00000367253 ADGRL1O94910 1474 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 ABCA8O94911 1581 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 USP5P45974 858 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 NUCB2P80303 420 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 NFKBIBQ15653 356 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 ZBTB33Q86T24 672 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 BICD2Q8TD16 824 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 ZC3H12CQ9C0D7 883 aaKnown RBP10.09□□□□□ -0.79
SYNE1-206ENST00000367253 H0YIN7 160 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 AMOTL2Q9Y2J4 779 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 FANCAO15360 1455 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 DENND4BO75064 1496 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-206ENST00000367253 BAG3O95817 575 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 AP1ARQ63HQ0 302 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 CCDC91Q7Z6B0 441 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 MFSD4BQ5TF39 518 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 LRP2BPQ9P2M1 347 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 CHD1O14646 1710 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 GSTO1P78417 241 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 FAM160A1Q05DH4 1040 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 BCS1LQ9Y276 419 aa10.08□□□□□ -0.8
SYNE1-206ENST00000367253 SLMAPQ14BN4 828 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 CCDC7Q96M83 1385 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 CCDC175P0C221 793 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 PDE3AQ14432 1141 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 TPTE2Q6XPS3 522 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 CAGE1Q8TC20 777 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 DNAAF4Q8WXU2 420 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 GOPCQ9HD26 462 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 MPNDQ8N594 471 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 WDR66Q8TBY9 1149 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 QTRT2Q9H974 415 aaKnown RBP10.07□□□□□ -0.8
SYNE1-206ENST00000367253 UBTFL1P0CB47 393 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-206ENST00000367253 DBN1Q16643 649 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 TRAPPC3LQ5T215 181 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 BTN2A1Q7KYR7 527 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 NLRP3Q96P20 1036 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 HOMER2Q9NSB8 354 aa10.07□□□□□ -0.8
SYNE1-206ENST00000367253 GNAI3P08754 354 aa10.06□□□□□ -0.8
SYNE1-206ENST00000367253 TNRQ92752 1358 aa10.06□□□□□ -0.8
SYNE1-206ENST00000367253 MCTP1Q6DN14 999 aa10.06□□□□□ -0.8
SYNE1-206ENST00000367253 ZGPATQ8N5A5 531 aaKnown RBP10.06□□□□□ -0.8
SYNE1-206ENST00000367253 CCDC150Q8NCX0 1101 aa10.06□□□□□ -0.8
SYNE1-206ENST00000367253 PICK1Q9NRD5 415 aa10.06□□□□□ -0.8
SYNE1-206ENST00000367253 ZNHIT6Q9NWK9 470 aaKnown RBP10.06□□□□□ -0.8
SYNE1-206ENST00000367253 TMOD4Q9NZQ9 345 aa10.06□□□□□ -0.8
SYNE1-206ENST00000367253 HIP1O00291 1037 aa10.06□□□□□ -0.8
SYNE1-206ENST00000367253 CEBPAP49715 358 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-206ENST00000367253 VEZTQ9HBM0 779 aa10.06□□□□□ -0.8
SYNE1-206ENST00000367253 COG6Q9Y2V7 657 aa10.06□□□□□ -0.8
SYNE1-206ENST00000367253 PRC1O43663 620 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 EIF3JO75822 258 aaKnown RBP10.05□□□□□ -0.8
SYNE1-206ENST00000367253 GRIPAP1Q4V328 841 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 NIM1KQ8IY84 436 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 CLASRPQ8N2M8 674 aaKnown RBP10.05□□□□□ -0.8
SYNE1-206ENST00000367253 SH2D4AQ9H788 454 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 CCDC61Q9Y6R9 512 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 PRAM1Q96QH2 718 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 CABP1Q9NZU7 370 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 SH3BP5O60239 455 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 SHANK2Q9UPX8 1470 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 NFE2L2Q16236 605 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 CLUAP1Q96AJ1 413 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 AKAP2Q9Y2D5 859 aa10.05□□□□□ -0.8
SYNE1-206ENST00000367253 KDM5BQ9UGL1 1544 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 REC8O95072 547 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 SKIV2LQ15477 1246 aaKnown RBP10.04□□□□□ -0.8
SYNE1-206ENST00000367253 CCDC73Q6ZRK6 1079 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 NECTIN2Q92692 538 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 PPP2R3CQ969Q6 453 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 RILPL2Q969X0 211 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 SPON1Q9HCB6 807 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 HOXD10P28358 340 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 INF2Q27J81 1249 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 PDCL2Q8N4E4 241 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 RNF214Q8ND24 703 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 DCPSQ96C86 337 aaKnown RBP10.04□□□□□ -0.8
SYNE1-206ENST00000367253 LRRC45Q96CN5 670 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 ESPNB1AK53 854 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 CCDC181Q5TID7 509 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 CAVIN1Q6NZI2 390 aaKnown RBP10.04□□□□□ -0.8
SYNE1-206ENST00000367253 TAX1BP1Q86VP1 789 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 NAT10Q9H0A0 1025 aaKnown RBP10.04□□□□□ -0.8
SYNE1-206ENST00000367253 PTPRKQ15262 1439 aa10.04□□□□□ -0.8
SYNE1-206ENST00000367253 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-206ENST00000367253 PTCD1O75127 700 aaKnown RBP10.03□□□□□ -0.8
SYNE1-206ENST00000367253 FAM196AQ6ZSG2 479 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 NUCKS1Q9H1E3 243 aaKnown RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms