RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 TEX14Q8IWB6 1497 aa10.55□□□□□ -0.72
SYNE1-205ENST00000367251 THUMPD2Q9BTF0 503 aaKnown RBP10.55□□□□□ -0.72
SYNE1-205ENST00000367251 DDX19AQ9NUU7 478 aaKnown RBP10.55□□□□□ -0.72
SYNE1-205ENST00000367251 HMG20BQ9P0W2 317 aa10.55□□□□□ -0.72
SYNE1-205ENST00000367251 MYL6BP14649 208 aa10.55□□□□□ -0.72
SYNE1-205ENST00000367251 FLIIQ13045 1269 aa10.55□□□□□ -0.72
SYNE1-205ENST00000367251 TOM1L2Q6ZVM7 507 aa10.55□□□□□ -0.72
SYNE1-205ENST00000367251 SLC26A8Q96RN1 970 aa10.55□□□□□ -0.72
SYNE1-205ENST00000367251 ZMYM4Q5VZL5 1548 aa10.54□□□□□ -0.72
SYNE1-205ENST00000367251 NEFHP12036 1026 aa10.54□□□□□ -0.72
SYNE1-205ENST00000367251 CEBPZQ03701 1054 aaKnown RBP10.54□□□□□ -0.72
SYNE1-205ENST00000367251 IQCEQ6IPM2 695 aa10.54□□□□□ -0.72
SYNE1-205ENST00000367251 MAST1Q9Y2H9 1570 aa10.54□□□□□ -0.72
SYNE1-205ENST00000367251 TRIM21P19474 475 aaKnown RBP10.54□□□□□ -0.72
SYNE1-205ENST00000367251 TESK2Q96S53 571 aa10.54□□□□□ -0.72
SYNE1-205ENST00000367251 ABCC10Q5T3U5 1492 aa10.54□□□□□ -0.72
SYNE1-205ENST00000367251 WDR7Q9Y4E6 1490 aa10.54□□□□□ -0.72
SYNE1-205ENST00000367251 PRPF40BQ6NWY9 871 aaKnown RBP10.54□□□□□ -0.72
SYNE1-205ENST00000367251 SMARCA5O60264 1052 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-205ENST00000367251 KDM4AO75164 1064 aa10.54□□□□□ -0.72
SYNE1-205ENST00000367251 CALRP27797 417 aaKnown RBP10.54□□□□□ -0.72
SYNE1-205ENST00000367251 MPHOSPH8Q99549 860 aa10.54□□□□□ -0.72
SYNE1-205ENST00000367251 PHAXQ9H814 394 aaKnown RBP10.54□□□□□ -0.72
SYNE1-205ENST00000367251 EIF3JO75822 258 aaKnown RBP10.53□□□□□ -0.72
SYNE1-205ENST00000367251 CA8P35219 290 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 DCTN1Q14203 1278 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 ADGBQ8N7X0 1667 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 STARD3NLO95772 234 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 SSFA2P28290 1259 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 MATR3P43243 847 aaKnown RBP eCLIP10.53□□□□□ -0.72
SYNE1-205ENST00000367251 FMNL2Q96PY5 1086 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 ECHDC1Q9NTX5 307 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 LRRFIP2Q9Y608 721 aaKnown RBP10.53□□□□□ -0.72
SYNE1-205ENST00000367251 HSP90AB3PQ58FF7 597 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 CCDC83Q8IWF9 413 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 UBAC1Q9BSL1 405 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 CCDC196A0A1B0GTZ2 297 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 ANKRD62A6NC57 917 aa10.53□□□□□ -0.72
SYNE1-205ENST00000367251 ZRSR2Q15696 482 aaKnown RBP10.53□□□□□ -0.72
SYNE1-205ENST00000367251 BAG4O95429 457 aaKnown RBP10.52□□□□□ -0.72
SYNE1-205ENST00000367251 FKBP4Q02790 459 aaKnown RBP eCLIP10.52□□□□□ -0.72
SYNE1-205ENST00000367251 C8orf34Q49A92 452 aa10.52□□□□□ -0.72
SYNE1-205ENST00000367251 MRPL50Q8N5N7 158 aaKnown RBP10.52□□□□□ -0.72
SYNE1-205ENST00000367251 DESP17661 470 aa10.52□□□□□ -0.73
SYNE1-205ENST00000367251 ATP2B1P20020 1258 aa10.52□□□□□ -0.73
SYNE1-205ENST00000367251 C16orf71Q8IYS4 520 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-205ENST00000367251 PHF8Q9UPP1 1060 aa10.52□□□□□ -0.73
SYNE1-205ENST00000367251 ANKRD44Q8N8A2 993 aa10.52□□□□□ -0.73
SYNE1-205ENST00000367251 ZHX3Q9H4I2 956 aa10.52□□□□□ -0.73
SYNE1-205ENST00000367251 ZSCAN12O43309 604 aa10.52□□□□□ -0.73
SYNE1-205ENST00000367251 LEKR1Q6ZMV7 388 aa10.52□□□□□ -0.73
SYNE1-205ENST00000367251 DDX54Q8TDD1 881 aaKnown RBP10.51□□□□□ -0.73
SYNE1-205ENST00000367251 ABCA5Q8WWZ7 1642 aa10.51□□□□□ -0.73
SYNE1-205ENST00000367251 PBRM1Q86U86 1689 aa10.51□□□□□ -0.73
SYNE1-205ENST00000367251 SOGA3Q5TF21 947 aa10.51□□□□□ -0.73
SYNE1-205ENST00000367251 IGHMBP2P38935 993 aaKnown RBP10.51□□□□□ -0.73
SYNE1-205ENST00000367251 TDO2P48775 406 aa10.51□□□□□ -0.73
SYNE1-205ENST00000367251 UBE2HP62256 183 aa10.51□□□□□ -0.73
SYNE1-205ENST00000367251 AIDAQ96BJ3 306 aa10.51□□□□□ -0.73
SYNE1-205ENST00000367251 AMOTL2Q9Y2J4 779 aa10.51□□□□□ -0.73
SYNE1-205ENST00000367251 GSDMDP57764 484 aa10.5□□□□□ -0.73
SYNE1-205ENST00000367251 MIS18AQ9NYP9 233 aa10.5□□□□□ -0.73
SYNE1-205ENST00000367251 STX6O43752 255 aa10.5□□□□□ -0.73
SYNE1-205ENST00000367251 BLMP54132 1417 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-205ENST00000367251 GBP3Q9H0R5 595 aa10.5□□□□□ -0.73
SYNE1-205ENST00000367251 PRDM11Q9NQV5 511 aa10.5□□□□□ -0.73
SYNE1-205ENST00000367251 PER1O15534 1290 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-205ENST00000367251 ERLIN2O94905 339 aa10.5□□□□□ -0.73
SYNE1-205ENST00000367251 TAF3Q5VWG9 929 aa10.5□□□□□ -0.73
SYNE1-205ENST00000367251 ZNF287Q9HBT7 754 aa10.5□□□□□ -0.73
SYNE1-205ENST00000367251 RNF123Q5XPI4 1314 aa10.5□□□□□ -0.73
SYNE1-205ENST00000367251 IFIT1P09914 478 aaKnown RBP10.5□□□□□ -0.73
SYNE1-205ENST00000367251 DRC1Q96MC2 740 aa10.5□□□□□ -0.73
SYNE1-205ENST00000367251 TEX13AQ9BXU3 409 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-205ENST00000367251 PCDHB15Q9Y5E8 787 aa10.5□□□□□ -0.73
SYNE1-205ENST00000367251 ZSCAN16Q9H4T2 348 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-205ENST00000367251 PPIP5K1Q6PFW1 1433 aa10.49□□□□□ -0.73
SYNE1-205ENST00000367251 ASXL2Q76L83 1435 aa10.49□□□□□ -0.73
SYNE1-205ENST00000367251 ZMYM3Q14202 1370 aa10.49□□□□□ -0.73
SYNE1-205ENST00000367251 TNRQ92752 1358 aa10.49□□□□□ -0.73
SYNE1-205ENST00000367251 ALDH1L1O75891 902 aa10.49□□□□□ -0.73
SYNE1-205ENST00000367251 MYD88Q99836 296 aa10.49□□□□□ -0.73
SYNE1-205ENST00000367251 TTF1Q15361 905 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-205ENST00000367251 SMC5Q8IY18 1101 aa10.49□□□□□ -0.73
SYNE1-205ENST00000367251 SFPQP23246 707 aaKnown RBP eCLIP10.49□□□□□ -0.73
SYNE1-205ENST00000367251 ZNF710Q8N1W2 664 aa10.49□□□□□ -0.73
SYNE1-205ENST00000367251 PYM1Q9BRP8 204 aaKnown RBP10.49□□□□□ -0.73
SYNE1-205ENST00000367251 RNF41Q9H4P4 317 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-205ENST00000367251 F6X3S4 739 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 RFX1P22670 979 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 RBM10P98175 930 aaKnown RBP10.48□□□□□ -0.73
SYNE1-205ENST00000367251 LRSAM1Q6UWE0 723 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 BICDL1Q6ZP65 573 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 NUP133Q8WUM0 1156 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 BMP2KQ9NSY1 1161 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-205ENST00000367251 ABCC2Q92887 1545 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 UHRF1BP1LA0JNW5 1464 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 PTPN14Q15678 1187 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 C8orf76Q96K31 380 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 TRAPPC8Q9Y2L5 1435 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms