RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 USP37Q86T82 979 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 GAS2L1Q99501 681 aaPredicted RBP4.84□□□□□ -1.63
USH2A-202ENST00000366942 PPIP5K2O43314 1243 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 EPB41L2O43491 1005 aaKnown RBP4.84□□□□□ -1.63
USH2A-202ENST00000366942 NFATC2IPQ8NCF5 419 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 CCDC136Q96JN2 1154 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 NUCB2P80303 420 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 STXBP4Q6ZWJ1 553 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 RTKN2Q8IZC4 609 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 GCNAQ96QF7 691 aa4.84□□□□□ -1.63
USH2A-202ENST00000366942 HIP1O00291 1037 aa4.84□□□□□ -1.64
USH2A-202ENST00000366942 ATXN3P54252 364 aaPredicted RBP4.84□□□□□ -1.64
USH2A-202ENST00000366942 SFSWAPQ12872 951 aaKnown RBP4.84□□□□□ -1.64
USH2A-202ENST00000366942 MAP3K11Q16584 847 aa4.84□□□□□ -1.64
USH2A-202ENST00000366942 CCDC93Q567U6 631 aa4.84□□□□□ -1.64
USH2A-202ENST00000366942 DPP8Q6V1X1 898 aaPredicted RBP4.84□□□□□ -1.64
USH2A-202ENST00000366942 LDHAL6AQ6ZMR3 332 aa4.84□□□□□ -1.64
USH2A-202ENST00000366942 MCF2L2Q86YR7 1114 aa4.84□□□□□ -1.64
USH2A-202ENST00000366942 MFSD1Q9H3U5 465 aa4.84□□□□□ -1.64
USH2A-202ENST00000366942 PIP4K2AP48426 406 aaPredicted RBP4.83□□□□□ -1.64
USH2A-202ENST00000366942 NBPF10Q6P3W6 841 aaKnown RBP4.83□□□□□ -1.64
USH2A-202ENST00000366942 REM2Q8IYK8 340 aaPredicted RBP4.83□□□□□ -1.64
USH2A-202ENST00000366942 RAB34Q9BZG1 259 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 BTG4Q9NY30 223 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 MTMR7Q9Y216 660 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 CCDC88BA6NC98 1476 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 ANKRD18BA2A2Z9 1011 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 AQRO60306 1485 aaKnown RBP eCLIP4.83□□□□□ -1.64
USH2A-202ENST00000366942 GNAI3P08754 354 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 MFSD14CQ5VZR4 134 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 CKAP2LQ8IYA6 745 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 CHAMP1Q96JM3 812 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 CCDC77Q9BR77 488 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 NAIPQ13075 1403 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 CCDC70Q6NSX1 233 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 UHRF1BP1LA0JNW5 1464 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 FANCIQ9NVI1 1328 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 H3BQV1 296 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 IFFO2Q5TF58 517 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 DMWDQ09019 674 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 DDX42Q86XP3 938 aaKnown RBP eCLIP4.83□□□□□ -1.64
USH2A-202ENST00000366942 CCDC83Q8IWF9 413 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 PCMTD1Q96MG8 357 aaPredicted RBP4.83□□□□□ -1.64
USH2A-202ENST00000366942 KIF2CQ99661 725 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 SRCIN1Q9C0H9 1055 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 COMMD10Q9Y6G5 202 aa4.83□□□□□ -1.64
USH2A-202ENST00000366942 PLEKHH1Q9ULM0 1364 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 C2CD5Q86YS7 1000 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 CREBRFQ8IUR6 639 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 HS6ST3Q8IZP7 471 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 CCDC12Q8WUD4 166 aaPredicted RBP4.82□□□□□ -1.64
USH2A-202ENST00000366942 TFIP11Q9UBB9 837 aaKnown RBP4.82□□□□□ -1.64
USH2A-202ENST00000366942 KBTBD13C9JR72 458 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 KIF20AO95235 890 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 VEGFAP15692 232 aaPredicted RBP4.82□□□□□ -1.64
USH2A-202ENST00000366942 NFKBIAP25963 317 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 SSTR3P32745 418 aaPredicted RBP4.82□□□□□ -1.64
USH2A-202ENST00000366942 CENPQQ7L2Z9 268 aaPredicted RBP4.82□□□□□ -1.64
USH2A-202ENST00000366942 NUTM1Q86Y26 1132 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 CLASRPQ8N2M8 674 aaKnown RBP4.82□□□□□ -1.64
USH2A-202ENST00000366942 PODXL2Q9NZ53 605 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 AFF2P51816 1311 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 ERFEQ4G0M1 354 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 ANKRD45Q5TZF3 282 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 FILIP1Q7Z7B0 1213 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 SEPT12Q8IYM1 358 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 TRIM5Q9C035 493 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 ABCF2Q9UG63 623 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 PUF60Q9UHX1 559 aaKnown RBP4.82□□□□□ -1.64
USH2A-202ENST00000366942 WWC3Q9ULE0 1092 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 BAG4O95429 457 aaKnown RBP4.82□□□□□ -1.64
USH2A-202ENST00000366942 SLC8A3P57103 927 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 IFIT5Q13325 482 aaKnown RBP4.82□□□□□ -1.64
USH2A-202ENST00000366942 PARP10Q53GL7 1025 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 ACSBG1Q96GR2 724 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 UBAC1Q9BSL1 405 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 DPP7Q9UHL4 492 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 MYO6Q9UM54 1294 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 ANKRD62A6NC57 917 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 CALM1P0DP23 149 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 CALM2P0DP24 149 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 CALM3P0DP25 149 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 CCDC26Q8TAB7 109 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 NUP133Q8WUM0 1156 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 NACA2Q9H009 215 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 HCN4Q9Y3Q4 1203 aa4.82□□□□□ -1.64
USH2A-202ENST00000366942 DPYSL4O14531 572 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 MAP3K12Q12852 859 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 FASTKD5Q7L8L6 764 aaKnown RBP4.81□□□□□ -1.64
USH2A-202ENST00000366942 DPP9Q86TI2 863 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 CTNNA3Q9UI47 895 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 SLC8A2Q9UPR5 921 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 ATP6V1DQ9Y5K8 247 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 LOC105371045A0A1W2PR82 267 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 ZBED4O75132 1171 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 UBTFL1P0CB47 393 aaPredicted RBP4.81□□□□□ -1.64
USH2A-202ENST00000366942 MRPS9P82933 396 aaKnown RBP4.81□□□□□ -1.64
USH2A-202ENST00000366942 PRKG1Q13976 671 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 METTL24Q5JXM2 366 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 ILDR1Q86SU0 546 aaPredicted RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms