RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 RTCBQ9Y3I0 505 aaKnown RBP12.02□□□□□ -0.49
HMGB1P39-201ENST00000366304 EMILIN1Q9Y6C2 1016 aa12.02□□□□□ -0.49
HMGB1P39-201ENST00000366304 PARP3Q9Y6F1 533 aa12.02□□□□□ -0.49
HMGB1P39-201ENST00000366304 FOXN1O15353 648 aa12.01□□□□□ -0.49
HMGB1P39-201ENST00000366304 PHKG2P15735 406 aa12.01□□□□□ -0.49
HMGB1P39-201ENST00000366304 SBF1O95248 1867 aa12.01□□□□□ -0.49
HMGB1P39-201ENST00000366304 FLT4P35916 1363 aa12.01□□□□□ -0.49
HMGB1P39-201ENST00000366304 RPS6KA4O75676 772 aa12□□□□□ -0.49
HMGB1P39-201ENST00000366304 RC3H1Q5TC82 1133 aaKnown RBP12□□□□□ -0.49
HMGB1P39-201ENST00000366304 GLTPD2A6NH11 291 aa11.99□□□□□ -0.49
HMGB1P39-201ENST00000366304 MKRN1Q9UHC7 482 aaKnown RBP11.99□□□□□ -0.49
HMGB1P39-201ENST00000366304 CNTNAP4Q9C0A0 1308 aa11.99□□□□□ -0.49
HMGB1P39-201ENST00000366304 COL5A3P25940 1745 aaPredicted RBP11.99□□□□□ -0.49
HMGB1P39-201ENST00000366304 TONSLQ96HA7 1378 aa11.98□□□□□ -0.49
HMGB1P39-201ENST00000366304 VEGFAP15692 232 aaPredicted RBP11.98□□□□□ -0.49
HMGB1P39-201ENST00000366304 RFC4P35249 363 aa11.98□□□□□ -0.49
HMGB1P39-201ENST00000366304 VASPP50552 380 aaPredicted RBP11.98□□□□□ -0.49
HMGB1P39-201ENST00000366304 EYA1Q99502 592 aa11.98□□□□□ -0.49
HMGB1P39-201ENST00000366304 SPG7Q9UQ90 795 aa11.98□□□□□ -0.49
HMGB1P39-201ENST00000366304 MYH14Q7Z406 1995 aaKnown RBP11.98□□□□□ -0.49
HMGB1P39-201ENST00000366304 POLRMTO00411 1230 aaKnown RBP11.97□□□□□ -0.49
HMGB1P39-201ENST00000366304 POTEIP0CG38 1075 aa11.97□□□□□ -0.49
HMGB1P39-201ENST00000366304 POTEJP0CG39 1038 aa11.97□□□□□ -0.49
HMGB1P39-201ENST00000366304 ZNF831Q5JPB2 1677 aa11.97□□□□□ -0.49
HMGB1P39-201ENST00000366304 ADAMTS7Q9UKP4 1686 aa11.97□□□□□ -0.49
HMGB1P39-201ENST00000366304 KIF24Q5T7B8 1368 aa11.96□□□□□ -0.49
HMGB1P39-201ENST00000366304 USP42Q9H9J4 1324 aaKnown RBP11.96□□□□□ -0.49
HMGB1P39-201ENST00000366304 ST20-MTHFSA0A0A6YYL1 179 aa11.96□□□□□ -0.49
HMGB1P39-201ENST00000366304 NFKBIEO00221 500 aa11.96□□□□□ -0.49
HMGB1P39-201ENST00000366304 TM4SF1P30408 202 aa11.96□□□□□ -0.49
HMGB1P39-201ENST00000366304 CARD14Q9BXL6 1004 aa11.96□□□□□ -0.49
HMGB1P39-201ENST00000366304 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.96□□□□□ -0.49
HMGB1P39-201ENST00000366304 ZC3H4Q9UPT8 1303 aaKnown RBP11.95□□□□□ -0.5
HMGB1P39-201ENST00000366304 LMNB1P20700 586 aa11.95□□□□□ -0.5
HMGB1P39-201ENST00000366304 CRKLP46109 303 aaKnown RBP11.95□□□□□ -0.5
HMGB1P39-201ENST00000366304 FAM161AQ3B820 660 aa11.95□□□□□ -0.5
HMGB1P39-201ENST00000366304 IFNL2Q8IZJ0 200 aa11.95□□□□□ -0.5
HMGB1P39-201ENST00000366304 PPM1GO15355 546 aaPredicted RBP11.93□□□□□ -0.5
HMGB1P39-201ENST00000366304 INTS5Q6P9B9 1019 aaKnown RBP11.93□□□□□ -0.5
HMGB1P39-201ENST00000366304 PRDM10Q9NQV6 1147 aa11.93□□□□□ -0.5
HMGB1P39-201ENST00000366304 ZBTB47Q9UFB7 747 aaPredicted RBP11.93□□□□□ -0.5
HMGB1P39-201ENST00000366304 TIAM2Q8IVF5 1701 aa11.93□□□□□ -0.5
HMGB1P39-201ENST00000366304 CNTNAP1P78357 1384 aa11.92□□□□□ -0.5
HMGB1P39-201ENST00000366304 WASHC2AQ641Q2 1341 aa11.92□□□□□ -0.5
HMGB1P39-201ENST00000366304 ERVV-2B6SEH9 535 aa11.92□□□□□ -0.5
HMGB1P39-201ENST00000366304 PTCD1O75127 700 aaKnown RBP11.92□□□□□ -0.5
HMGB1P39-201ENST00000366304 CARMIL3Q8ND23 1372 aa11.92□□□□□ -0.5
HMGB1P39-201ENST00000366304 TJP1Q07157 1748 aa11.91□□□□□ -0.5
HMGB1P39-201ENST00000366304 ANKRD26Q9UPS8 1709 aa11.91□□□□□ -0.5
HMGB1P39-201ENST00000366304 VEGFBP49765 207 aa11.91□□□□□ -0.5
HMGB1P39-201ENST00000366304 LBX1P52954 281 aa11.91□□□□□ -0.5
HMGB1P39-201ENST00000366304 USPL1Q5W0Q7 1092 aa11.91□□□□□ -0.5
HMGB1P39-201ENST00000366304 KIF20BQ96Q89 1820 aa11.9□□□□□ -0.5
HMGB1P39-201ENST00000366304 PASKQ96RG2 1323 aa11.9□□□□□ -0.5
HMGB1P39-201ENST00000366304 NFIXQ14938 502 aa11.9□□□□□ -0.5
HMGB1P39-201ENST00000366304 ABHD8Q96I13 439 aa11.9□□□□□ -0.5
HMGB1P39-201ENST00000366304 TSPYL2Q9H2G4 693 aaPredicted RBP11.9□□□□□ -0.5
HMGB1P39-201ENST00000366304 BCL2L12Q9HB09 334 aa11.9□□□□□ -0.5
HMGB1P39-201ENST00000366304 GABBR2O75899 941 aa11.89□□□□□ -0.51
HMGB1P39-201ENST00000366304 EIF4A2Q14240 407 aaKnown RBP11.89□□□□□ -0.51
HMGB1P39-201ENST00000366304 WBP1LQ9NX94 342 aa11.89□□□□□ -0.51
HMGB1P39-201ENST00000366304 POLKQ9UBT6 870 aa11.89□□□□□ -0.51
HMGB1P39-201ENST00000366304 DLEC1Q9Y238 1755 aa11.88□□□□□ -0.51
HMGB1P39-201ENST00000366304 HSPA8P11142 646 aaKnown RBP11.88□□□□□ -0.51
HMGB1P39-201ENST00000366304 CTCFP49711 727 aaPredicted RBP11.88□□□□□ -0.51
HMGB1P39-201ENST00000366304 TTLL6Q8N841 843 aa11.88□□□□□ -0.51
HMGB1P39-201ENST00000366304 ZNF579Q8NAF0 562 aaKnown RBP11.88□□□□□ -0.51
HMGB1P39-201ENST00000366304 NRXN2Q9P2S2 1712 aa11.88□□□□□ -0.51
HMGB1P39-201ENST00000366304 SOS1Q07889 1333 aaPredicted RBP11.87□□□□□ -0.51
HMGB1P39-201ENST00000366304 DDNO94850 711 aaPredicted RBP11.87□□□□□ -0.51
HMGB1P39-201ENST00000366304 CABP4P57796 275 aa11.87□□□□□ -0.51
HMGB1P39-201ENST00000366304 C2CD5Q86YS7 1000 aa11.87□□□□□ -0.51
HMGB1P39-201ENST00000366304 RASEFQ8IZ41 740 aa11.87□□□□□ -0.51
HMGB1P39-201ENST00000366304 NFATC2IPQ8NCF5 419 aa11.87□□□□□ -0.51
HMGB1P39-201ENST00000366304 AFDNP55196 1824 aaKnown RBP11.87□□□□□ -0.51
HMGB1P39-201ENST00000366304 ITGBL1O95965 494 aaPredicted RBP11.86□□□□□ -0.51
HMGB1P39-201ENST00000366304 DNAJC10Q8IXB1 793 aa11.86□□□□□ -0.51
HMGB1P39-201ENST00000366304 CCDC88AQ3V6T2 1871 aa11.86□□□□□ -0.51
HMGB1P39-201ENST00000366304 C21orf2O43822 256 aa11.85□□□□□ -0.51
HMGB1P39-201ENST00000366304 SERPINB2P05120 415 aa11.85□□□□□ -0.51
HMGB1P39-201ENST00000366304 ERFEQ4G0M1 354 aa11.85□□□□□ -0.51
HMGB1P39-201ENST00000366304 ZNF530Q6P9A1 599 aaPredicted RBP11.85□□□□□ -0.51
HMGB1P39-201ENST00000366304 AEBP1Q8IUX7 1158 aa11.85□□□□□ -0.51
HMGB1P39-201ENST00000366304 PHF12Q96QT6 1004 aa11.85□□□□□ -0.51
HMGB1P39-201ENST00000366304 PCDH10Q9P2E7 1040 aa11.85□□□□□ -0.51
HMGB1P39-201ENST00000366304 NUBP1P53384 320 aa11.84□□□□□ -0.51
HMGB1P39-201ENST00000366304 DPY19L2Q6NUT2 758 aa11.84□□□□□ -0.51
HMGB1P39-201ENST00000366304 CCDC24Q8N4L8 307 aa11.84□□□□□ -0.51
HMGB1P39-201ENST00000366304 VIRMAQ69YN4 1812 aaKnown RBP11.83□□□□□ -0.51
HMGB1P39-201ENST00000366304 ZPR1O75312 459 aa11.83□□□□□ -0.52
HMGB1P39-201ENST00000366304 CYP19A1P11511 503 aaPredicted RBP11.83□□□□□ -0.52
HMGB1P39-201ENST00000366304 RGS19P49795 217 aa11.83□□□□□ -0.52
HMGB1P39-201ENST00000366304 AIDAQ96BJ3 306 aa11.83□□□□□ -0.52
HMGB1P39-201ENST00000366304 NARFQ9UHQ1 456 aa11.83□□□□□ -0.52
HMGB1P39-201ENST00000366304 TNRC18O15417 2968 aaPredicted RBP11.83□□□□□ -0.52
HMGB1P39-201ENST00000366304 COL11A2P13942 1736 aaPredicted RBP11.83□□□□□ -0.52
HMGB1P39-201ENST00000366304 TMEM88BA6NKF7 163 aa11.82□□□□□ -0.52
HMGB1P39-201ENST00000366304 H0YIN7 160 aa11.82□□□□□ -0.52
HMGB1P39-201ENST00000366304 HSP90AB1P08238 724 aaKnown RBP11.82□□□□□ -0.52
HMGB1P39-201ENST00000366304 TNNT2P45379 298 aaPredicted RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms