RNA–Protein interactions for RNA: ENST00000359541.6

GTF3C2-202, Transcript of general transcription factor IIIC subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF3C2, Length 3,992 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C2-202ENST00000359541 PPP1R42Q7Z4L9 355 aa11.34□□□□□ -0.59
GTF3C2-202ENST00000359541 CNTROBQ8N137 903 aa11.34□□□□□ -0.59
GTF3C2-202ENST00000359541 SSH3Q8TE77 659 aa11.34□□□□□ -0.59
GTF3C2-202ENST00000359541 LRRC59Q96AG4 307 aaKnown RBP11.34□□□□□ -0.59
GTF3C2-202ENST00000359541 ESYT1Q9BSJ8 1104 aa11.34□□□□□ -0.59
GTF3C2-202ENST00000359541 PHAXQ9H814 394 aaKnown RBP11.34□□□□□ -0.59
GTF3C2-202ENST00000359541 CHD2O14647 1828 aaKnown RBP11.33□□□□□ -0.59
GTF3C2-202ENST00000359541 PI4KAP2A4QPH2 592 aa11.33□□□□□ -0.6
GTF3C2-202ENST00000359541 PI4KAP1Q8N8J0 262 aa11.33□□□□□ -0.6
GTF3C2-202ENST00000359541 STAP2Q9UGK3 403 aa11.33□□□□□ -0.6
GTF3C2-202ENST00000359541 NWD1Q149M9 1564 aa11.33□□□□□ -0.6
GTF3C2-202ENST00000359541 CACNA1FO60840 1977 aa11.33□□□□□ -0.6
GTF3C2-202ENST00000359541 ALDH1L1O75891 902 aa11.33□□□□□ -0.6
GTF3C2-202ENST00000359541 HYPKQ9NX55 129 aa11.33□□□□□ -0.6
GTF3C2-202ENST00000359541 ZNF142P52746 1687 aaPredicted RBP11.33□□□□□ -0.6
GTF3C2-202ENST00000359541 XPCQ01831 940 aaPredicted RBP11.33□□□□□ -0.6
GTF3C2-202ENST00000359541 C19orf44Q9H6X5 657 aa11.33□□□□□ -0.6
GTF3C2-202ENST00000359541 LGR6Q9HBX8 967 aa11.33□□□□□ -0.6
GTF3C2-202ENST00000359541 OVOS2A0A0G2JMS6 1433 aa11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 SETD1BQ9UPS6 1966 aaKnown RBP11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 CLASRPQ8N2M8 674 aaKnown RBP11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 ORAI2Q96SN7 254 aa11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 NFAT5O94916 1531 aa11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 CSB-PGBD3P0DP91 1061 aa11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 NEK4P51957 841 aa11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 RUFY2Q8WXA3 655 aa11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 FAM208AQ9UK61 1670 aaKnown RBP11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 TATP17735 454 aaPredicted RBP11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 NEXNQ0ZGT2 675 aa11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 RHPN1Q8TCX5 695 aa11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 IL1RAPL2Q9NP60 686 aa11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 SPG7Q9UQ90 795 aa11.32□□□□□ -0.6
GTF3C2-202ENST00000359541 DDX49Q9Y6V7 483 aaKnown RBP11.31□□□□□ -0.6
GTF3C2-202ENST00000359541 CD2BP2O95400 341 aaKnown RBP11.31□□□□□ -0.6
GTF3C2-202ENST00000359541 ADRA2BP18089 450 aa11.31□□□□□ -0.6
GTF3C2-202ENST00000359541 LTN1O94822 1766 aa11.31□□□□□ -0.6
GTF3C2-202ENST00000359541 NLRP2Q9NX02 1062 aa11.31□□□□□ -0.6
GTF3C2-202ENST00000359541 CHMLP26374 656 aa11.3□□□□□ -0.6
GTF3C2-202ENST00000359541 SSFA2P28290 1259 aa11.3□□□□□ -0.6
GTF3C2-202ENST00000359541 BEND3Q5T5X7 828 aa11.3□□□□□ -0.6
GTF3C2-202ENST00000359541 KSR2Q6VAB6 950 aa11.3□□□□□ -0.6
GTF3C2-202ENST00000359541 GLRX3O76003 335 aaKnown RBP11.3□□□□□ -0.6
GTF3C2-202ENST00000359541 IFIT2P09913 472 aaKnown RBP11.3□□□□□ -0.6
GTF3C2-202ENST00000359541 POLA2Q14181 598 aa11.29□□□□□ -0.6
GTF3C2-202ENST00000359541 FAM43AQ8N2R8 423 aa11.29□□□□□ -0.6
GTF3C2-202ENST00000359541 DIAPH3Q9NSV4 1193 aa11.29□□□□□ -0.6
GTF3C2-202ENST00000359541 NCLP19338 710 aaKnown RBP11.29□□□□□ -0.6
GTF3C2-202ENST00000359541 TSHZ3Q63HK5 1081 aa11.29□□□□□ -0.6
GTF3C2-202ENST00000359541 NUTM1Q86Y26 1132 aa11.29□□□□□ -0.6
GTF3C2-202ENST00000359541 TTC5Q8N0Z6 440 aa11.29□□□□□ -0.6
GTF3C2-202ENST00000359541 MAP3K2Q9Y2U5 619 aa11.29□□□□□ -0.6
GTF3C2-202ENST00000359541 TTC41PQ6P2S7 1318 aa11.29□□□□□ -0.6
GTF3C2-202ENST00000359541 BAG4O95429 457 aaKnown RBP11.29□□□□□ -0.6
GTF3C2-202ENST00000359541 TRIM44Q96DX7 344 aaPredicted RBP11.29□□□□□ -0.6
GTF3C2-202ENST00000359541 SALL3Q9BXA9 1300 aa11.28□□□□□ -0.6
GTF3C2-202ENST00000359541 RIC3Q7Z5B4 369 aa11.28□□□□□ -0.6
GTF3C2-202ENST00000359541 GIGYF1O75420 1035 aaPredicted RBP11.28□□□□□ -0.6
GTF3C2-202ENST00000359541 G3BP1Q13283 466 aaKnown RBP eCLIP11.28□□□□□ -0.6
GTF3C2-202ENST00000359541 CLEC17AQ6ZS10 378 aa11.28□□□□□ -0.6
GTF3C2-202ENST00000359541 GRPEL1Q9HAV7 217 aa11.28□□□□□ -0.6
GTF3C2-202ENST00000359541 ZC3H6P61129 1189 aaKnown RBP11.28□□□□□ -0.6
GTF3C2-202ENST00000359541 MCTP1Q6DN14 999 aa11.28□□□□□ -0.6
GTF3C2-202ENST00000359541 LINS1Q8NG48 757 aa11.28□□□□□ -0.6
GTF3C2-202ENST00000359541 FSD2A1L4K1 749 aa11.27□□□□□ -0.6
GTF3C2-202ENST00000359541 KLHL40Q2TBA0 621 aa11.27□□□□□ -0.6
GTF3C2-202ENST00000359541 LARP1Q6PKG0 1096 aaKnown RBP11.27□□□□□ -0.6
GTF3C2-202ENST00000359541 SLIT3O75094 1523 aa11.27□□□□□ -0.6
GTF3C2-202ENST00000359541 HIP1O00291 1037 aa11.27□□□□□ -0.61
GTF3C2-202ENST00000359541 NBPF7P0C2Y1 421 aaPredicted RBP11.27□□□□□ -0.61
GTF3C2-202ENST00000359541 DDX21Q9NR30 783 aaKnown RBP eCLIP11.27□□□□□ -0.61
GTF3C2-202ENST00000359541 MARF1Q9Y4F3 1742 aaKnown RBP11.27□□□□□ -0.61
GTF3C2-202ENST00000359541 ERBB3P21860 1342 aa11.27□□□□□ -0.61
GTF3C2-202ENST00000359541 NPHP3Q7Z494 1330 aa11.27□□□□□ -0.61
GTF3C2-202ENST00000359541 KIF1AQ12756 1690 aa11.27□□□□□ -0.61
GTF3C2-202ENST00000359541 KCNQ3O43525 872 aa11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 PHRF1Q9P1Y6 1649 aaKnown RBP11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 ANXA1P04083 346 aa11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 CADPS2Q86UW7 1296 aa11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 IFNL2Q8IZJ0 200 aa11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 MED1Q15648 1581 aaPredicted RBP11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 C1orf167Q5SNV9 1468 aa11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 MTX1Q13505 466 aa11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 INTS4Q96HW7 963 aaKnown RBP11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.26□□□□□ -0.612e-6■■□□□ 13
GTF3C2-202ENST00000359541 XRCC6P12956 609 aaKnown RBP eCLIP11.26□□□□□ -0.615e-8■■■■□ 23.6
GTF3C2-202ENST00000359541 AIMP1Q12904 312 aaKnown RBP11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 TMX3Q96JJ7 454 aa11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 ECHDC1Q9NTX5 307 aa11.26□□□□□ -0.61
GTF3C2-202ENST00000359541 GRM8O00222 908 aa11.25□□□□□ -0.61
GTF3C2-202ENST00000359541 KCNJ4P48050 445 aa11.25□□□□□ -0.61
GTF3C2-202ENST00000359541 BCL11BQ9C0K0 894 aaPredicted RBP11.25□□□□□ -0.61
GTF3C2-202ENST00000359541 ADAMTSL3P82987 1691 aa11.24□□□□□ -0.61
GTF3C2-202ENST00000359541 LMO7Q8WWI1 1683 aa11.24□□□□□ -0.61
GTF3C2-202ENST00000359541 MBD3O95983 291 aa11.24□□□□□ -0.61
GTF3C2-202ENST00000359541 SYAP1Q96A49 352 aaPredicted RBP11.24□□□□□ -0.61
GTF3C2-202ENST00000359541 ADCY9O60503 1353 aa11.24□□□□□ -0.61
GTF3C2-202ENST00000359541 TMEM132AQ24JP5 1023 aa11.24□□□□□ -0.61
GTF3C2-202ENST00000359541 ZNF790Q6PG37 636 aa11.24□□□□□ -0.61
GTF3C2-202ENST00000359541 ZKSCAN1P17029 563 aaPredicted RBP11.24□□□□□ -0.61
GTF3C2-202ENST00000359541 NOL8Q76FK4 1167 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms