RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 CAVIN4Q5BKX8 364 aa11.85□□□□□ -0.51
CLIP1-202ENST00000358808 TRMT1LQ7Z2T5 733 aaKnown RBP11.85□□□□□ -0.51
CLIP1-202ENST00000358808 PDRG1Q9NUG6 133 aa11.85□□□□□ -0.51
CLIP1-202ENST00000358808 LUZP1Q86V48 1076 aa11.84□□□□□ -0.51
CLIP1-202ENST00000358808 RGS22Q8NE09 1264 aa11.84□□□□□ -0.51
CLIP1-202ENST00000358808 BLOC1S2Q6QNY1 142 aa11.84□□□□□ -0.51
CLIP1-202ENST00000358808 SERPINA10Q9UK55 444 aa11.84□□□□□ -0.51
CLIP1-202ENST00000358808 IMMTQ16891 758 aaKnown RBP11.84□□□□□ -0.51
CLIP1-202ENST00000358808 DZIP1Q86YF9 867 aaKnown RBP11.84□□□□□ -0.51
CLIP1-202ENST00000358808 FERMT1Q9BQL6 677 aa11.84□□□□□ -0.51
CLIP1-202ENST00000358808 ERBINQ96RT1 1412 aa11.84□□□□□ -0.51
CLIP1-202ENST00000358808 AAMPQ13685 434 aa11.84□□□□□ -0.51
CLIP1-202ENST00000358808 CRACR2AQ9BSW2 395 aa11.84□□□□□ -0.51
CLIP1-202ENST00000358808 ZNF652Q9Y2D9 606 aa11.84□□□□□ -0.51
CLIP1-202ENST00000358808 ZNF518AQ6AHZ1 1483 aa11.84□□□□□ -0.51
CLIP1-202ENST00000358808 MINDY4BA8MYZ0 360 aa11.83□□□□□ -0.51
CLIP1-202ENST00000358808 TICAM2Q86XR7 235 aa11.83□□□□□ -0.51
CLIP1-202ENST00000358808 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.83□□□□□ -0.51
CLIP1-202ENST00000358808 PUF60Q9UHX1 559 aaKnown RBP11.83□□□□□ -0.51
CLIP1-202ENST00000358808 WDR33Q9C0J8 1336 aaKnown RBP11.83□□□□□ -0.52
CLIP1-202ENST00000358808 SHTN1A0MZ66 631 aa11.83□□□□□ -0.52
CLIP1-202ENST00000358808 ZC3H6P61129 1189 aaKnown RBP11.83□□□□□ -0.52
CLIP1-202ENST00000358808 CDCA7LQ96GN5 454 aa11.83□□□□□ -0.52
CLIP1-202ENST00000358808 CCDC7Q96M83 1385 aa11.83□□□□□ -0.52
CLIP1-202ENST00000358808 CCT4P50991 539 aaKnown RBP11.83□□□□□ -0.52
CLIP1-202ENST00000358808 KIAA1107Q9UPP5 1409 aa11.83□□□□□ -0.52
CLIP1-202ENST00000358808 METTL24Q5JXM2 366 aa11.83□□□□□ -0.52
CLIP1-202ENST00000358808 TMCO3Q6UWJ1 677 aa11.83□□□□□ -0.52
CLIP1-202ENST00000358808 RAB3IL1Q8TBN0 382 aa11.83□□□□□ -0.52
CLIP1-202ENST00000358808 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.82□□□□□ -0.52
CLIP1-202ENST00000358808 BTBD11A6QL63 1104 aa11.82□□□□□ -0.52
CLIP1-202ENST00000358808 TMEM266Q2M3C6 531 aa11.82□□□□□ -0.52
CLIP1-202ENST00000358808 CFAP100Q494V2 611 aa11.82□□□□□ -0.52
CLIP1-202ENST00000358808 JAKMIP1Q96N16 626 aaKnown RBP11.82□□□□□ -0.52
CLIP1-202ENST00000358808 ZWINTO95229 277 aa11.82□□□□□ -0.52
CLIP1-202ENST00000358808 CBX1P83916 185 aa11.82□□□□□ -0.52
CLIP1-202ENST00000358808 TCP11L2Q8N4U5 519 aa11.82□□□□□ -0.52
CLIP1-202ENST00000358808 RPGRQ92834 1020 aaKnown RBP11.82□□□□□ -0.52
CLIP1-202ENST00000358808 NUP153P49790 1475 aaKnown RBP11.81□□□□□ -0.52
CLIP1-202ENST00000358808 ADAMTS2O95450 1211 aa11.81□□□□□ -0.52
CLIP1-202ENST00000358808 STARD3NLO95772 234 aa11.81□□□□□ -0.52
CLIP1-202ENST00000358808 ZNF444Q8N0Y2 327 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-202ENST00000358808 GCC1Q96CN9 775 aa11.81□□□□□ -0.52
CLIP1-202ENST00000358808 CWC27Q6UX04 472 aaKnown RBP11.81□□□□□ -0.52
CLIP1-202ENST00000358808 FILIP1Q7Z7B0 1213 aa11.81□□□□□ -0.52
CLIP1-202ENST00000358808 SPTY2D1Q68D10 685 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-202ENST00000358808 LRSAM1Q6UWE0 723 aa11.81□□□□□ -0.52
CLIP1-202ENST00000358808 MPHOSPH6Q99547 160 aaKnown RBP11.81□□□□□ -0.52
CLIP1-202ENST00000358808 ERICH4A6NGS2 130 aa11.81□□□□□ -0.52
CLIP1-202ENST00000358808 EXOSC9Q06265 439 aaKnown RBP11.81□□□□□ -0.52
CLIP1-202ENST00000358808 LRRC45Q96CN5 670 aa11.81□□□□□ -0.52
CLIP1-202ENST00000358808 NOB1Q9ULX3 412 aaKnown RBP11.81□□□□□ -0.52
CLIP1-202ENST00000358808 KLHL10Q6JEL2 608 aa11.81□□□□□ -0.52
CLIP1-202ENST00000358808 RAB34Q9BZG1 259 aa11.81□□□□□ -0.52
CLIP1-202ENST00000358808 NUP62CLQ9H1M0 184 aa11.81□□□□□ -0.52
CLIP1-202ENST00000358808 CHD1O14646 1710 aa11.8□□□□□ -0.52
CLIP1-202ENST00000358808 ADAMTS8Q9UP79 889 aa11.8□□□□□ -0.52
CLIP1-202ENST00000358808 TMCO5BA8MYB1 307 aa11.8□□□□□ -0.52
CLIP1-202ENST00000358808 FGFR1OPO95684 399 aaKnown RBP11.8□□□□□ -0.52
CLIP1-202ENST00000358808 DDX11Q96FC9 970 aa11.8□□□□□ -0.52
CLIP1-202ENST00000358808 BMS1Q14692 1282 aaKnown RBP11.8□□□□□ -0.52
CLIP1-202ENST00000358808 TDRD12Q587J7 1177 aaKnown RBP11.8□□□□□ -0.52
CLIP1-202ENST00000358808 OTUD6BQ8N6M0 293 aa11.8□□□□□ -0.52
CLIP1-202ENST00000358808 CFAP57Q96MR6 1250 aa11.8□□□□□ -0.52
CLIP1-202ENST00000358808 ZMYND15Q9H091 742 aa11.8□□□□□ -0.52
CLIP1-202ENST00000358808 BAG4O95429 457 aaKnown RBP11.8□□□□□ -0.52
CLIP1-202ENST00000358808 PPP1R14CQ8TAE6 165 aa11.8□□□□□ -0.52
CLIP1-202ENST00000358808 CETN1Q12798 172 aa11.8□□□□□ -0.52
CLIP1-202ENST00000358808 SLC12A5Q9H2X9 1139 aa11.8□□□□□ -0.52
CLIP1-202ENST00000358808 SAMM50Q9Y512 469 aa11.8□□□□□ -0.52
CLIP1-202ENST00000358808 PPP2R1AP30153 589 aa11.79□□□□□ -0.52
CLIP1-202ENST00000358808 KCNH5Q8NCM2 988 aa11.79□□□□□ -0.52
CLIP1-202ENST00000358808 TAOK3Q9H2K8 898 aa11.79□□□□□ -0.52
CLIP1-202ENST00000358808 PODXL2Q9NZ53 605 aa11.79□□□□□ -0.52
CLIP1-202ENST00000358808 KRT32Q14532 448 aa11.79□□□□□ -0.52
CLIP1-202ENST00000358808 BICD1Q96G01 975 aa11.79□□□□□ -0.52
CLIP1-202ENST00000358808 GBP3Q9H0R5 595 aa11.79□□□□□ -0.52
CLIP1-202ENST00000358808 PDZRN3Q9UPQ7 1066 aa11.79□□□□□ -0.52
CLIP1-202ENST00000358808 DHX29Q7Z478 1369 aaKnown RBP11.79□□□□□ -0.52
CLIP1-202ENST00000358808 FSD2A1L4K1 749 aa11.79□□□□□ -0.52
CLIP1-202ENST00000358808 SRGAP3O43295 1099 aa11.79□□□□□ -0.52
CLIP1-202ENST00000358808 PRC1O43663 620 aa11.79□□□□□ -0.52
CLIP1-202ENST00000358808 RRS1Q15050 365 aaKnown RBP11.79□□□□□ -0.52
CLIP1-202ENST00000358808 ZSCAN31Q96LW9 406 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-202ENST00000358808 IFIT1P09914 478 aaKnown RBP11.78□□□□□ -0.52
CLIP1-202ENST00000358808 CASQ1P31415 396 aa11.78□□□□□ -0.52
CLIP1-202ENST00000358808 TMOD3Q9NYL9 352 aa11.78□□□□□ -0.52
CLIP1-202ENST00000358808 ABCC5O15440 1437 aa11.78□□□□□ -0.52
CLIP1-202ENST00000358808 RANBP6O60518 1105 aaKnown RBP11.78□□□□□ -0.52
CLIP1-202ENST00000358808 KIF20AO95235 890 aa11.78□□□□□ -0.52
CLIP1-202ENST00000358808 RNF187Q5TA31 235 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-202ENST00000358808 CTCFLQ8NI51 663 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-202ENST00000358808 SYCP3Q8IZU3 236 aa11.78□□□□□ -0.52
CLIP1-202ENST00000358808 NGLY1Q96IV0 654 aa11.78□□□□□ -0.52
CLIP1-202ENST00000358808 ACTN2P35609 894 aa11.78□□□□□ -0.52
CLIP1-202ENST00000358808 SLF2Q8IX21 1173 aa11.78□□□□□ -0.52
CLIP1-202ENST00000358808 ANKRD30BQ9BXX2 1392 aa11.78□□□□□ -0.52
CLIP1-202ENST00000358808 NDC80O14777 642 aa11.78□□□□□ -0.52
CLIP1-202ENST00000358808 C16orf71Q8IYS4 520 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-202ENST00000358808 PRPF4BQ13523 1007 aaKnown RBP11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms