RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 HEG1Q9ULI3 1381 aa27.07■■□□□ 1.92
UPF3A-201ENST00000351487 PI4KAP2A4QPH2 592 aa27.06■■□□□ 1.92
UPF3A-201ENST00000351487 BAG4O95429 457 aaKnown RBP27.06■■□□□ 1.92
UPF3A-201ENST00000351487 MPRIPQ6WCQ1 1025 aa27.06■■□□□ 1.92
UPF3A-201ENST00000351487 PI4KAP1Q8N8J0 262 aa27.06■■□□□ 1.92
UPF3A-201ENST00000351487 IL17RAQ96F46 866 aa27.06■■□□□ 1.92
UPF3A-201ENST00000351487 ANAPC15P60006 121 aa27.05■■□□□ 1.92
UPF3A-201ENST00000351487 C1orf141Q5JVX7 400 aa27.05■■□□□ 1.92
UPF3A-201ENST00000351487 EPB41L2O43491 1005 aaKnown RBP27.05■■□□□ 1.92
UPF3A-201ENST00000351487 ANKRD24Q8TF21 1146 aa27.05■■□□□ 1.92
UPF3A-201ENST00000351487 TRIM6-TRIM34B2RNG4 842 aa27.04■■□□□ 1.92
UPF3A-201ENST00000351487 NBPF7P0C2Y1 421 aaPredicted RBP27.04■■□□□ 1.92
UPF3A-201ENST00000351487 DBF4Q9UBU7 674 aaPredicted RBP27.04■■□□□ 1.92
UPF3A-201ENST00000351487 CRYBG1Q9Y4K1 1723 aa27.04■■□□□ 1.92
UPF3A-201ENST00000351487 MCCP23508 829 aa27.04■■□□□ 1.92
UPF3A-201ENST00000351487 RILPL2Q969X0 211 aa27.04■■□□□ 1.92
UPF3A-201ENST00000351487 ALS2Q96Q42 1657 aa27.04■■□□□ 1.92
UPF3A-201ENST00000351487 RGPD5Q99666 1765 aa27.03■■□□□ 1.92
UPF3A-201ENST00000351487 SURF6O75683 361 aaKnown RBP27.03■■□□□ 1.92
UPF3A-201ENST00000351487 IL1RAPL2Q9NP60 686 aa27.03■■□□□ 1.92
UPF3A-201ENST00000351487 RHPN1Q8TCX5 695 aa27.02■■□□□ 1.92
UPF3A-201ENST00000351487 KIF1BPQ96EK5 621 aa27.02■■□□□ 1.92
UPF3A-201ENST00000351487 SRGAP3O43295 1099 aa27.02■■□□□ 1.92
UPF3A-201ENST00000351487 MCM2P49736 904 aa27.02■■□□□ 1.92
UPF3A-201ENST00000351487 XPCQ01831 940 aaPredicted RBP27.02■■□□□ 1.92
UPF3A-201ENST00000351487 UNC5CLQ8IV45 518 aa27.02■■□□□ 1.92
UPF3A-201ENST00000351487 GRPEL1Q9HAV7 217 aa27.01■■□□□ 1.91
UPF3A-201ENST00000351487 C1orf167Q5SNV9 1468 aa27.01■■□□□ 1.91
UPF3A-201ENST00000351487 GIGYF1O75420 1035 aaPredicted RBP27■■□□□ 1.91
UPF3A-201ENST00000351487 MTX1Q13505 466 aa27■■□□□ 1.91
UPF3A-201ENST00000351487 ARXQ96QS3 562 aa27■■□□□ 1.91
UPF3A-201ENST00000351487 HSP90AB4PQ58FF6 505 aa27■■□□□ 1.91
UPF3A-201ENST00000351487 ZGPATQ8N5A5 531 aaKnown RBP27■■□□□ 1.91
UPF3A-201ENST00000351487 PI4K2BQ8TCG2 481 aa27■■□□□ 1.91
UPF3A-201ENST00000351487 PANK2Q9BZ23 570 aa27■■□□□ 1.91
UPF3A-201ENST00000351487 KLHL40Q2TBA0 621 aa26.99■■□□□ 1.91
UPF3A-201ENST00000351487 ANO2Q9NQ90 1003 aa26.99■■□□□ 1.91
UPF3A-201ENST00000351487 NEK4P51957 841 aa26.98■■□□□ 1.91
UPF3A-201ENST00000351487 ALDH1L1O75891 902 aa26.98■■□□□ 1.91
UPF3A-201ENST00000351487 ANXA1P04083 346 aa26.98■■□□□ 1.91
UPF3A-201ENST00000351487 NUTM1Q86Y26 1132 aa26.98■■□□□ 1.91
UPF3A-201ENST00000351487 KRT28Q7Z3Y7 464 aa26.97■■□□□ 1.91
UPF3A-201ENST00000351487 PALD1Q9ULE6 856 aa26.97■■□□□ 1.91
UPF3A-201ENST00000351487 AXIN2Q9Y2T1 843 aa26.97■■□□□ 1.91
UPF3A-201ENST00000351487 USP42Q9H9J4 1324 aaKnown RBP26.97■■□□□ 1.91
UPF3A-201ENST00000351487 PKP1Q13835 747 aa26.97■■□□□ 1.91
UPF3A-201ENST00000351487 ERBB3P21860 1342 aa26.96■■□□□ 1.91
UPF3A-201ENST00000351487 SCN11AQ9UI33 1791 aa26.96■■□□□ 1.91
UPF3A-201ENST00000351487 TMX3Q96JJ7 454 aa26.96■■□□□ 1.91
UPF3A-201ENST00000351487 LMOD2Q6P5Q4 547 aa26.94■■□□□ 1.9
UPF3A-201ENST00000351487 KSR2Q6VAB6 950 aa26.94■■□□□ 1.9
UPF3A-201ENST00000351487 CUL4AQ13619 759 aa26.94■■□□□ 1.9
UPF3A-201ENST00000351487 MAP3K2Q9Y2U5 619 aa26.94■■□□□ 1.9
UPF3A-201ENST00000351487 ABCC6O95255 1503 aa26.93■■□□□ 1.9
UPF3A-201ENST00000351487 PROSER3Q2NL68 480 aa26.93■■□□□ 1.9
UPF3A-201ENST00000351487 PROSER2Q86WR7 435 aaPredicted RBP26.93■■□□□ 1.9
UPF3A-201ENST00000351487 GAS2L3Q86XJ1 694 aa26.93■■□□□ 1.9
UPF3A-201ENST00000351487 HDAC5Q9UQL6 1122 aa26.93■■□□□ 1.9
UPF3A-201ENST00000351487 ZDHHC9Q9Y397 364 aa26.93■■□□□ 1.9
UPF3A-201ENST00000351487 IL25Q9H293 177 aa26.92■■□□□ 1.9
UPF3A-201ENST00000351487 HYPKQ9NX55 129 aa26.92■■□□□ 1.9
UPF3A-201ENST00000351487 DDX49Q9Y6V7 483 aaKnown RBP26.92■■□□□ 1.9
UPF3A-201ENST00000351487 TTC41PQ6P2S7 1318 aa26.92■■□□□ 1.9
UPF3A-201ENST00000351487 HSPA4P34932 840 aa26.92■■□□□ 1.9
UPF3A-201ENST00000351487 MCTP1Q6DN14 999 aa26.92■■□□□ 1.9
UPF3A-201ENST00000351487 C19orf44Q9H6X5 657 aa26.92■■□□□ 1.9
UPF3A-201ENST00000351487 CNTROBQ8N137 903 aa26.9■■□□□ 1.9
UPF3A-201ENST00000351487 INTS4Q96HW7 963 aaKnown RBP26.9■■□□□ 1.9
UPF3A-201ENST00000351487 LMBRD1Q9NUN5 540 aa26.9■■□□□ 1.9
UPF3A-201ENST00000351487 C5P01031 1676 aa26.9■■□□□ 1.9
UPF3A-201ENST00000351487 RAD50Q92878 1312 aa26.9■■□□□ 1.9
UPF3A-201ENST00000351487 SGSM2O43147 1006 aa26.89■■□□□ 1.9
UPF3A-201ENST00000351487 COL18A1P39060 1754 aa26.89■■□□□ 1.89
UPF3A-201ENST00000351487 C9orf78Q9NZ63 289 aaPredicted RBP26.89■■□□□ 1.89
UPF3A-201ENST00000351487 UTYO14607 1347 aa26.88■■□□□ 1.89
UPF3A-201ENST00000351487 DDX21Q9NR30 783 aaKnown RBP eCLIP26.88■■□□□ 1.89
UPF3A-201ENST00000351487 PLEKHG2Q9H7P9 1386 aa26.88■■□□□ 1.89
UPF3A-201ENST00000351487 PRAMEF22A3QJZ6 481 aa26.88■■□□□ 1.89
UPF3A-201ENST00000351487 PLEKHG5O94827 1062 aa26.88■■□□□ 1.89
UPF3A-201ENST00000351487 LINS1Q8NG48 757 aa26.88■■□□□ 1.89
UPF3A-201ENST00000351487 GLRX3O76003 335 aaKnown RBP26.87■■□□□ 1.89
UPF3A-201ENST00000351487 KDM6AO15550 1401 aaPredicted RBP26.87■■□□□ 1.89
UPF3A-201ENST00000351487 ERC1Q8IUD2 1116 aa26.86■■□□□ 1.89
UPF3A-201ENST00000351487 DCCP43146 1447 aa26.86■■□□□ 1.89
UPF3A-201ENST00000351487 DDX58O95786 925 aaKnown RBP26.85■■□□□ 1.89
UPF3A-201ENST00000351487 MAP4K4O95819 1239 aaPredicted RBP26.85■■□□□ 1.89
UPF3A-201ENST00000351487 OS9Q13438 667 aaPredicted RBP26.85■■□□□ 1.89
UPF3A-201ENST00000351487 CLASRPQ8N2M8 674 aaKnown RBP26.85■■□□□ 1.89
UPF3A-201ENST00000351487 NPHP3Q7Z494 1330 aa26.84■■□□□ 1.89
UPF3A-201ENST00000351487 PDIA6Q15084 440 aa26.84■■□□□ 1.89
UPF3A-201ENST00000351487 CWF19L2Q2TBE0 894 aaKnown RBP26.84■■□□□ 1.89
UPF3A-201ENST00000351487 ZNF445P59923 1031 aa26.84■■□□□ 1.89
UPF3A-201ENST00000351487 RAPGEF4Q8WZA2 1011 aa26.84■■□□□ 1.89
UPF3A-201ENST00000351487 LSG1Q9H089 658 aaKnown RBP26.84■■□□□ 1.89
UPF3A-201ENST00000351487 RRAGDQ9NQL2 400 aaPredicted RBP26.84■■□□□ 1.89
UPF3A-201ENST00000351487 MRC1P22897 1456 aa26.83■■□□□ 1.89
UPF3A-201ENST00000351487 GRM8O00222 908 aa26.83■■□□□ 1.89
UPF3A-201ENST00000351487 BRD1O95696 1058 aa26.83■■□□□ 1.89
UPF3A-201ENST00000351487 ZC3H6P61129 1189 aaKnown RBP26.82■■□□□ 1.88
UPF3A-201ENST00000351487 ZNF790Q6PG37 636 aa26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms