RNA–Protein interactions for RNA: ENST00000349703.6

RFC1-201, Transcript of replication factor C subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RFC1, Length 4,859 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-201ENST00000349703 GOLGA6AQ9NYA3 693 aa7.14□□□□□ -1.27
RFC1-201ENST00000349703 PPP4R3BQ5MIZ7 849 aa7.14□□□□□ -1.27
RFC1-201ENST00000349703 EPC1Q9H2F5 836 aa7.14□□□□□ -1.27
RFC1-201ENST00000349703 PPCSQ9HAB8 311 aa7.14□□□□□ -1.27
RFC1-201ENST00000349703 NCOA1Q15788 1441 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 CASKIN1Q8WXD9 1431 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 TTC39BQ5VTQ0 682 aaPredicted RBP7.13□□□□□ -1.27
RFC1-201ENST00000349703 MTERF4Q7Z6M4 381 aaKnown RBP7.13□□□□□ -1.27
RFC1-201ENST00000349703 CMTR1Q8N1G2 835 aaKnown RBP7.13□□□□□ -1.27
RFC1-201ENST00000349703 USP17L3A6NCW0 530 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 USP17L4A6NCW7 530 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 MRE11P49959 708 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 CFAP58Q5T655 872 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 USP17L2Q6R6M4 530 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 DPH6Q7L8W6 267 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 USP17L1Q7RTZ2 530 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 FAM13AO94988 1023 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 PTPROQ16827 1216 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 LINC01559Q495D7 138 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 SPC25Q9HBM1 224 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 EFCAB5A4FU69 1503 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 XPOTO43592 962 aaKnown RBP7.13□□□□□ -1.27
RFC1-201ENST00000349703 DNAJB2P25686 324 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 CDC25BP30305 580 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 MTMR3Q13615 1198 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 UVSSAQ2YD98 709 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.13□□□□□ -1.27
RFC1-201ENST00000349703 SAMM50Q9Y512 469 aa7.13□□□□□ -1.27
RFC1-201ENST00000349703 A0A1W2PQ27 194 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 A0A1W2PQ64 194 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 A0A1W2PQC6 194 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 A0A1W2PQD8 194 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 CHRM1P11229 460 aaPredicted RBP7.12□□□□□ -1.27
RFC1-201ENST00000349703 GTF2IP78347 998 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 REM2Q8IYK8 340 aaPredicted RBP7.12□□□□□ -1.27
RFC1-201ENST00000349703 LRRN4Q8WUT4 740 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 SKOR2Q2VWA4 1001 aaPredicted RBP7.12□□□□□ -1.27
RFC1-201ENST00000349703 NIF3L1Q9GZT8 377 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 AMOTL2Q9Y2J4 779 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 MYOM3Q5VTT5 1437 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 ATAD2BQ9ULI0 1458 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 MEN1O00255 615 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 PIP4K2BP78356 416 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 PFDN2Q9UHV9 154 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 MIA2Q96PC5 1412 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 C2orf72A6NCS6 295 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 HOXA2O43364 376 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 USP4Q13107 963 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 NCOA4Q13772 614 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 NR6A1Q15406 480 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 MTERF2Q49AM1 385 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 USP7Q93009 1102 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 HDAC9Q9UKV0 1011 aa7.12□□□□□ -1.27
RFC1-201ENST00000349703 BIVM-ERCC5R4GMW8 1640 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 FRAT2O75474 233 aaPredicted RBP7.11□□□□□ -1.27
RFC1-201ENST00000349703 PRR7Q8TB68 274 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 NOC3LQ8WTT2 800 aaKnown RBP7.11□□□□□ -1.27
RFC1-201ENST00000349703 SCG3Q8WXD2 468 aaKnown RBP7.11□□□□□ -1.27
RFC1-201ENST00000349703 RNF123Q5XPI4 1314 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 BACH1O14867 736 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 KIF4AO95239 1232 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 DUSP9Q99956 384 aaKnown RBP7.11□□□□□ -1.27
RFC1-201ENST00000349703 KCNJ6P48051 423 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 NBPF20Q3BBV1 942 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 GPHNQ9NQX3 736 aaPredicted RBP7.11□□□□□ -1.27
RFC1-201ENST00000349703 DCTN4Q9UJW0 460 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 TRIM35Q9UPQ4 493 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 ZNF652Q9Y2D9 606 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 MRFAP1Q9Y605 127 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 USP47Q96K76 1375 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 PRPF4BQ13523 1007 aaKnown RBP7.11□□□□□ -1.27
RFC1-201ENST00000349703 FOXD4L6Q3SYB3 417 aaPredicted RBP7.11□□□□□ -1.27
RFC1-201ENST00000349703 C1orf228Q6PIY5 440 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 TMCO3Q6UWJ1 677 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 FOXD4L3Q6VB84 417 aaPredicted RBP7.11□□□□□ -1.27
RFC1-201ENST00000349703 ANKMY2Q8IV38 441 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 SPATA32Q96LK8 384 aa7.11□□□□□ -1.27
RFC1-201ENST00000349703 PRC1O43663 620 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 CDC45O75419 566 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 PTPREP23469 700 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 USP46P62068 366 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 PICALMQ13492 652 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 NUDT18Q6ZVK8 323 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 BTN2A2Q8WVV5 523 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 HNRNPCL1O60812 293 aaKnown RBP7.1□□□□□ -1.27
RFC1-201ENST00000349703 IQSEC1Q6DN90 963 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.1□□□□□ -1.27
RFC1-201ENST00000349703 PLEKHH2Q8IVE3 1493 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 DTHD1Q6ZMT9 781 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 C11orf74Q86VG3 221 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 MYLK4Q86YV6 388 aaPredicted RBP7.1□□□□□ -1.27
RFC1-201ENST00000349703 FAM50BQ9Y247 325 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 FNDC3AQ9Y2H6 1198 aaKnown RBP7.1□□□□□ -1.27
RFC1-201ENST00000349703 FHOD3Q2V2M9 1422 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 AQRO60306 1485 aaKnown RBP eCLIP7.1□□□□□ -1.272e-7■■■■■ 35.5
RFC1-201ENST00000349703 IPO8O15397 1037 aaKnown RBP7.1□□□□□ -1.27
RFC1-201ENST00000349703 ODR4Q5SWX8 454 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 CCDC102BQ68D86 513 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 ZBTB46Q86UZ6 589 aa7.1□□□□□ -1.27
RFC1-201ENST00000349703 PNMA6FA0A0J9YX94 578 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms