RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 LRRC4BQ9NT99 713 aa15.41■□□□□ 0.06
SNCA-202ENST00000345009 MIS18AQ9NYP9 233 aa15.41■□□□□ 0.06
SNCA-202ENST00000345009 SALL2Q9Y467 1007 aaPredicted RBP15.41■□□□□ 0.06
SNCA-202ENST00000345009 SNRPA1P09661 255 aaKnown RBP15.4■□□□□ 0.06
SNCA-202ENST00000345009 KCNQ4P56696 695 aa15.4■□□□□ 0.06
SNCA-202ENST00000345009 ZNF496Q96IT1 587 aaPredicted RBP15.4■□□□□ 0.06
SNCA-202ENST00000345009 IFT57Q9NWB7 429 aa15.4■□□□□ 0.06
SNCA-202ENST00000345009 TFCP2L1Q9NZI6 479 aa15.4■□□□□ 0.06
SNCA-202ENST00000345009 CHL1O00533 1208 aa15.39■□□□□ 0.05
SNCA-202ENST00000345009 AK7Q96M32 723 aa15.39■□□□□ 0.05
SNCA-202ENST00000345009 IL16Q14005 1332 aa15.39■□□□□ 0.05
SNCA-202ENST00000345009 VIRMAQ69YN4 1812 aaKnown RBP15.38■□□□□ 0.05
SNCA-202ENST00000345009 SLC15A2Q16348 729 aa15.38■□□□□ 0.05
SNCA-202ENST00000345009 RC3H1Q5TC82 1133 aaKnown RBP15.38■□□□□ 0.05
SNCA-202ENST00000345009 FLAD1Q8NFF5 587 aa15.38■□□□□ 0.05
SNCA-202ENST00000345009 CHMP4AQ9BY43 222 aa15.38■□□□□ 0.05
SNCA-202ENST00000345009 HEG1Q9ULI3 1381 aa15.37■□□□□ 0.05
SNCA-202ENST00000345009 KCNQ3O43525 872 aa15.37■□□□□ 0.05
SNCA-202ENST00000345009 ITPK1Q13572 414 aa15.37■□□□□ 0.05
SNCA-202ENST00000345009 NPM2Q86SE8 214 aaKnown RBP15.37■□□□□ 0.05
SNCA-202ENST00000345009 SENP3-EIF4A1A0A087X0R7 540 aa15.36■□□□□ 0.05
SNCA-202ENST00000345009 EIF4A1P60842 406 aaKnown RBP15.36■□□□□ 0.05
SNCA-202ENST00000345009 DNAJC10Q8IXB1 793 aa15.36■□□□□ 0.05
SNCA-202ENST00000345009 SLC4A9Q96Q91 983 aa15.36■□□□□ 0.05
SNCA-202ENST00000345009 LY75O60449 1722 aa15.36■□□□□ 0.05
SNCA-202ENST00000345009 ZNF853P0CG23 659 aa15.35■□□□□ 0.05
SNCA-202ENST00000345009 R3HDM1Q15032 1099 aaKnown RBP15.35■□□□□ 0.05
SNCA-202ENST00000345009 LINC00116Q8NCU8 138 aa15.35■□□□□ 0.05
SNCA-202ENST00000345009 MYH16Q9H6N6 1097 aa15.35■□□□□ 0.05
SNCA-202ENST00000345009 RTCBQ9Y3I0 505 aaKnown RBP15.35■□□□□ 0.05
SNCA-202ENST00000345009 CNTNAP4Q9C0A0 1308 aa15.35■□□□□ 0.05
SNCA-202ENST00000345009 C19orf67A6NJJ6 358 aa15.34■□□□□ 0.05
SNCA-202ENST00000345009 GIGYF1O75420 1035 aaPredicted RBP15.34■□□□□ 0.05
SNCA-202ENST00000345009 CRKLP46109 303 aaKnown RBP15.34■□□□□ 0.05
SNCA-202ENST00000345009 MBIPQ9NS73 344 aa15.34■□□□□ 0.05
SNCA-202ENST00000345009 CCDC87Q9NVE4 849 aa15.34■□□□□ 0.05
SNCA-202ENST00000345009 SIPA1L3O60292 1781 aaPredicted RBP15.34■□□□□ 0.05
SNCA-202ENST00000345009 RREB1Q92766 1687 aa15.33■□□□□ 0.04
SNCA-202ENST00000345009 GNPATO15228 680 aa15.33■□□□□ 0.04
SNCA-202ENST00000345009 CYP19A1P11511 503 aaPredicted RBP15.33■□□□□ 0.04
SNCA-202ENST00000345009 CD44P16070 742 aaKnown RBP15.33■□□□□ 0.04
SNCA-202ENST00000345009 VASPP50552 380 aaPredicted RBP15.33■□□□□ 0.04
SNCA-202ENST00000345009 GOLGA2Q08379 1002 aa15.33■□□□□ 0.04
SNCA-202ENST00000345009 ANO8Q9HCE9 1232 aaPredicted RBP15.33■□□□□ 0.04
SNCA-202ENST00000345009 PSDA5PKW4 1024 aaPredicted RBP15.32■□□□□ 0.04
SNCA-202ENST00000345009 RPS6KA4O75676 772 aa15.32■□□□□ 0.04
SNCA-202ENST00000345009 HOXB7P09629 217 aa15.32■□□□□ 0.04
SNCA-202ENST00000345009 SSFA2P28290 1259 aa15.32■□□□□ 0.04
SNCA-202ENST00000345009 HNRNPUQ00839 825 aaKnown RBP eCLIP15.32■□□□□ 0.04
SNCA-202ENST00000345009 ZNF827Q17R98 1081 aa15.32■□□□□ 0.04
SNCA-202ENST00000345009 TRAPPC3LQ5T215 181 aa15.32■□□□□ 0.04
SNCA-202ENST00000345009 KCPQ6ZWJ8 1503 aa15.32■□□□□ 0.04
SNCA-202ENST00000345009 ZNF831Q5JPB2 1677 aa15.32■□□□□ 0.04
SNCA-202ENST00000345009 MNX1P50219 401 aaPredicted RBP15.31■□□□□ 0.04
SNCA-202ENST00000345009 SOS1Q07889 1333 aaPredicted RBP15.31■□□□□ 0.04
SNCA-202ENST00000345009 PAPPAQ13219 1627 aa15.31■□□□□ 0.04
SNCA-202ENST00000345009 NUP188Q5SRE5 1749 aa15.31■□□□□ 0.04
SNCA-202ENST00000345009 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.3■□□□□ 0.04
SNCA-202ENST00000345009 E9PSI1 815 aa15.3■□□□□ 0.04
SNCA-202ENST00000345009 EVX2Q03828 476 aa15.3■□□□□ 0.04
SNCA-202ENST00000345009 INTS5Q6P9B9 1019 aaKnown RBP15.3■□□□□ 0.04
SNCA-202ENST00000345009 SLC16A10Q8TF71 515 aa15.3■□□□□ 0.04
SNCA-202ENST00000345009 USP16Q9Y5T5 823 aa15.3■□□□□ 0.04
SNCA-202ENST00000345009 A0A087WZG4 1122 aa15.29■□□□□ 0.04
SNCA-202ENST00000345009 PHF14O94880 888 aa15.29■□□□□ 0.04
SNCA-202ENST00000345009 CANXP27824 592 aaKnown RBP15.29■□□□□ 0.04
SNCA-202ENST00000345009 RFC4P35249 363 aa15.29■□□□□ 0.04
SNCA-202ENST00000345009 DUSP27Q5VZP5 1158 aa15.29■□□□□ 0.04
SNCA-202ENST00000345009 ZBTB47Q9UFB7 747 aaPredicted RBP15.29■□□□□ 0.04
SNCA-202ENST00000345009 UBR2Q8IWV8 1755 aa15.29■□□□□ 0.04
SNCA-202ENST00000345009 ERBB4Q15303 1308 aa15.28■□□□□ 0.04
SNCA-202ENST00000345009 ZNF521Q96K83 1311 aa15.28■□□□□ 0.04
SNCA-202ENST00000345009 EIF2S2P20042 333 aaKnown RBP15.28■□□□□ 0.04
SNCA-202ENST00000345009 IL6STP40189 918 aaPredicted RBP15.28■□□□□ 0.04
SNCA-202ENST00000345009 TSR2Q969E8 191 aaKnown RBP15.28■□□□□ 0.04
SNCA-202ENST00000345009 C4BP0C0L5 1744 aa15.28■□□□□ 0.04
SNCA-202ENST00000345009 C5P01031 1676 aa15.28■□□□□ 0.04
SNCA-202ENST00000345009 PNPLA7Q6ZV29 1317 aa15.27■□□□□ 0.04
SNCA-202ENST00000345009 ZPR1O75312 459 aa15.27■□□□□ 0.04
SNCA-202ENST00000345009 A1BGP04217 495 aa15.27■□□□□ 0.04
SNCA-202ENST00000345009 KLHL34Q8N239 644 aa15.27■□□□□ 0.04
SNCA-202ENST00000345009 ZBTB1Q9Y2K1 713 aa15.27■□□□□ 0.04
SNCA-202ENST00000345009 ZNF330Q9Y3S2 320 aaPredicted RBP15.27■□□□□ 0.04
SNCA-202ENST00000345009 TAF1LQ8IZX4 1826 aa15.27■□□□□ 0.03
SNCA-202ENST00000345009 PRAMEF22A3QJZ6 481 aa15.26■□□□□ 0.03
SNCA-202ENST00000345009 HDGFL1Q5TGJ6 251 aa15.26■□□□□ 0.03
SNCA-202ENST00000345009 COL23A1Q86Y22 540 aaPredicted RBP15.26■□□□□ 0.03
SNCA-202ENST00000345009 ARHGEF1Q92888 912 aaKnown RBP15.26■□□□□ 0.03
SNCA-202ENST00000345009 ARXQ96QS3 562 aa15.26■□□□□ 0.03
SNCA-202ENST00000345009 KDM3BQ7LBC6 1761 aa15.26■□□□□ 0.03
SNCA-202ENST00000345009 FANCIQ9NVI1 1328 aa15.25■□□□□ 0.03
SNCA-202ENST00000345009 ELL2O00472 640 aaPredicted RBP15.25■□□□□ 0.03
SNCA-202ENST00000345009 EIF5P55010 431 aaKnown RBP15.25■□□□□ 0.03
SNCA-202ENST00000345009 CCDC30Q5VVM6 783 aa15.25■□□□□ 0.03
SNCA-202ENST00000345009 SLFN5Q08AF3 891 aa15.24■□□□□ 0.03
SNCA-202ENST00000345009 KRT24Q2M2I5 525 aa15.24■□□□□ 0.03
SNCA-202ENST00000345009 TWISTNBQ3B726 338 aaPredicted RBP15.24■□□□□ 0.03
SNCA-202ENST00000345009 NLGN1Q8N2Q7 840 aa15.24■□□□□ 0.03
SNCA-202ENST00000345009 C8orf58Q8NAV2 365 aa15.24■□□□□ 0.03
SNCA-202ENST00000345009 MTFR1LQ9H019 292 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms