RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 FMNL2Q96PY5 1086 aa15.98■□□□□ 0.15
CLK3-201ENST00000345005 MEIS3Q99687 375 aa15.98■□□□□ 0.15
CLK3-201ENST00000345005 GNAI3P08754 354 aa15.98■□□□□ 0.15
CLK3-201ENST00000345005 SIRT2Q8IXJ6 389 aa15.98■□□□□ 0.15
CLK3-201ENST00000345005 ANKRD44Q8N8A2 993 aa15.98■□□□□ 0.15
CLK3-201ENST00000345005 UBR2Q8IWV8 1755 aa15.97■□□□□ 0.15
CLK3-201ENST00000345005 NRAPQ86VF7 1730 aa15.97■□□□□ 0.15
CLK3-201ENST00000345005 NWD2Q9ULI1 1742 aa15.97■□□□□ 0.15
CLK3-201ENST00000345005 SNRPA1P09661 255 aaKnown RBP15.97■□□□□ 0.15
CLK3-201ENST00000345005 NUCB1Q02818 461 aa15.97■□□□□ 0.15
CLK3-201ENST00000345005 ZNF496Q96IT1 587 aaPredicted RBP15.97■□□□□ 0.15
CLK3-201ENST00000345005 DDX21Q9NR30 783 aaKnown RBP eCLIP15.97■□□□□ 0.15
CLK3-201ENST00000345005 LAMB4A4D0S4 1761 aa15.97■□□□□ 0.15
CLK3-201ENST00000345005 DISP2A7MBM2 1401 aa15.96■□□□□ 0.15
CLK3-201ENST00000345005 PRAMEF22A3QJZ6 481 aa15.96■□□□□ 0.14
CLK3-201ENST00000345005 ADAMTS2O95450 1211 aa15.96■□□□□ 0.14
CLK3-201ENST00000345005 GNAI2P04899 355 aa15.96■□□□□ 0.14
CLK3-201ENST00000345005 DNAAF4Q8WXU2 420 aa15.96■□□□□ 0.14
CLK3-201ENST00000345005 ATP10DQ9P241 1426 aa15.95■□□□□ 0.14
CLK3-201ENST00000345005 PAPPAQ13219 1627 aa15.95■□□□□ 0.14
CLK3-201ENST00000345005 CEP85Q6P2H3 762 aa15.95■□□□□ 0.14
CLK3-201ENST00000345005 SRCIN1Q9C0H9 1055 aa15.95■□□□□ 0.14
CLK3-201ENST00000345005 KAT6BQ8WYB5 2073 aa15.95■□□□□ 0.14
CLK3-201ENST00000345005 ITGB4P16144 1822 aa15.95■□□□□ 0.14
CLK3-201ENST00000345005 PI4KAP2A4QPH2 592 aa15.94■□□□□ 0.14
CLK3-201ENST00000345005 HMMRO75330 724 aa15.94■□□□□ 0.14
CLK3-201ENST00000345005 ANXA1P04083 346 aa15.94■□□□□ 0.14
CLK3-201ENST00000345005 CHD1LQ86WJ1 897 aa15.94■□□□□ 0.14
CLK3-201ENST00000345005 PI4KAP1Q8N8J0 262 aa15.94■□□□□ 0.14
CLK3-201ENST00000345005 DDX58O95786 925 aaKnown RBP15.94■□□□□ 0.14
CLK3-201ENST00000345005 KSR2Q6VAB6 950 aa15.94■□□□□ 0.14
CLK3-201ENST00000345005 IL27Q8NEV9 243 aa15.94■□□□□ 0.14
CLK3-201ENST00000345005 CDCA7Q9BWT1 371 aaPredicted RBP15.94■□□□□ 0.14
CLK3-201ENST00000345005 DCTPP1Q9H773 170 aa15.94■□□□□ 0.14
CLK3-201ENST00000345005 TOGARAM1Q9Y4F4 1720 aa15.94■□□□□ 0.14
CLK3-201ENST00000345005 NUTM2BA6NNL0 878 aaPredicted RBP15.93■□□□□ 0.14
CLK3-201ENST00000345005 NUTM2EB1AL46 878 aaPredicted RBP15.93■□□□□ 0.14
CLK3-201ENST00000345005 PDIA6Q15084 440 aa15.93■□□□□ 0.14
CLK3-201ENST00000345005 PROSER3Q2NL68 480 aa15.93■□□□□ 0.14
CLK3-201ENST00000345005 ANKRD45Q5TZF3 282 aa15.93■□□□□ 0.14
CLK3-201ENST00000345005 NUTM2AQ8IVF1 878 aaPredicted RBP15.93■□□□□ 0.14
CLK3-201ENST00000345005 THRAP3Q9Y2W1 955 aaKnown RBP15.93■□□□□ 0.14
CLK3-201ENST00000345005 ADCY9O60503 1353 aa15.92■□□□□ 0.14
CLK3-201ENST00000345005 JCADQ9P266 1359 aa15.92■□□□□ 0.14
CLK3-201ENST00000345005 EXOC5O00471 708 aa15.92■□□□□ 0.14
CLK3-201ENST00000345005 RGS17Q9UGC6 210 aaPredicted RBP15.92■□□□□ 0.14
CLK3-201ENST00000345005 BEND3Q5T5X7 828 aa15.91■□□□□ 0.14
CLK3-201ENST00000345005 USP44Q9H0E7 712 aa15.91■□□□□ 0.14
CLK3-201ENST00000345005 UPF2Q9HAU5 1272 aaKnown RBP15.91■□□□□ 0.14
CLK3-201ENST00000345005 GLI3P10071 1580 aa15.91■□□□□ 0.14
CLK3-201ENST00000345005 UBTFL1P0CB47 393 aaPredicted RBP15.91■□□□□ 0.14
CLK3-201ENST00000345005 LNPKQ9C0E8 428 aa15.91■□□□□ 0.14
CLK3-201ENST00000345005 TMOD3Q9NYL9 352 aa15.91■□□□□ 0.14
CLK3-201ENST00000345005 USP16Q9Y5T5 823 aa15.91■□□□□ 0.14
CLK3-201ENST00000345005 LRP6O75581 1613 aa15.9■□□□□ 0.14
CLK3-201ENST00000345005 ALDH1L1O75891 902 aa15.9■□□□□ 0.14
CLK3-201ENST00000345005 MAP3K2Q9Y2U5 619 aa15.9■□□□□ 0.14
CLK3-201ENST00000345005 ERBB4Q15303 1308 aa15.9■□□□□ 0.14
CLK3-201ENST00000345005 SPATA31A1Q5TZJ5 1347 aa15.9■□□□□ 0.14
CLK3-201ENST00000345005 KCPQ6ZWJ8 1503 aa15.89■□□□□ 0.13
CLK3-201ENST00000345005 SLIT2O94813 1529 aa15.89■□□□□ 0.13
CLK3-201ENST00000345005 ATP8B2P98198 1209 aa15.89■□□□□ 0.13
CLK3-201ENST00000345005 HDAC5Q9UQL6 1122 aa15.89■□□□□ 0.13
CLK3-201ENST00000345005 TNS2Q63HR2 1409 aa15.88■□□□□ 0.13
CLK3-201ENST00000345005 MYL6BP14649 208 aa15.88■□□□□ 0.13
CLK3-201ENST00000345005 AIMP1Q12904 312 aaKnown RBP15.87■□□□□ 0.13
CLK3-201ENST00000345005 RIC3Q7Z5B4 369 aa15.87■□□□□ 0.13
CLK3-201ENST00000345005 LRRFIP2Q9Y608 721 aaKnown RBP15.87■□□□□ 0.13
CLK3-201ENST00000345005 SPATA31A5Q5VU36 1347 aa15.87■□□□□ 0.13
CLK3-201ENST00000345005 SPATA31A7Q8IWB4 1347 aa15.87■□□□□ 0.13
CLK3-201ENST00000345005 SOCS7O14512 581 aa15.87■□□□□ 0.13
CLK3-201ENST00000345005 L1TD1Q5T7N2 865 aaKnown RBP15.87■□□□□ 0.13
CLK3-201ENST00000345005 LINS1Q8NG48 757 aa15.87■□□□□ 0.13
CLK3-201ENST00000345005 XAGE3Q8WTP9 111 aa15.87■□□□□ 0.13
CLK3-201ENST00000345005 COPS6Q7L5N1 327 aa15.86■□□□□ 0.13
CLK3-201ENST00000345005 FAM43AQ8N2R8 423 aa15.86■□□□□ 0.13
CLK3-201ENST00000345005 AFDNP55196 1824 aaKnown RBP15.85■□□□□ 0.13
CLK3-201ENST00000345005 IBTKQ9P2D0 1353 aaPredicted RBP15.85■□□□□ 0.13
CLK3-201ENST00000345005 NEXNQ0ZGT2 675 aa15.85■□□□□ 0.13
CLK3-201ENST00000345005 BARGINQ6ZT62 677 aa15.85■□□□□ 0.13
CLK3-201ENST00000345005 LRP10Q7Z4F1 713 aa15.85■□□□□ 0.13
CLK3-201ENST00000345005 PIGBQ92521 554 aa15.85■□□□□ 0.13
CLK3-201ENST00000345005 ARFGEF2Q9Y6D5 1785 aa15.85■□□□□ 0.13
CLK3-201ENST00000345005 PTCD1O75127 700 aaKnown RBP15.84■□□□□ 0.13
CLK3-201ENST00000345005 SLC4A3P48751 1232 aa15.84■□□□□ 0.13
CLK3-201ENST00000345005 DDB1Q16531 1140 aa15.84■□□□□ 0.13
CLK3-201ENST00000345005 ANKRD13DQ6ZTN6 518 aa15.84■□□□□ 0.13
CLK3-201ENST00000345005 VSIG10Q8N0Z9 540 aa15.84■□□□□ 0.13
CLK3-201ENST00000345005 TEX13AQ9BXU3 409 aaPredicted RBP15.84■□□□□ 0.13
CLK3-201ENST00000345005 C9orf78Q9NZ63 289 aaPredicted RBP15.84■□□□□ 0.13
CLK3-201ENST00000345005 NBPF7P0C2Y1 421 aaPredicted RBP15.84■□□□□ 0.13
CLK3-201ENST00000345005 UNC5CLQ8IV45 518 aa15.84■□□□□ 0.13
CLK3-201ENST00000345005 CCDC9Q9Y3X0 531 aaKnown RBP15.84■□□□□ 0.13
CLK3-201ENST00000345005 BCL9O00512 1426 aa15.83■□□□□ 0.13
CLK3-201ENST00000345005 DOT1LQ8TEK3 1739 aa15.83■□□□□ 0.13
CLK3-201ENST00000345005 SPATA31A6Q5VVP1 1343 aa15.83■□□□□ 0.12
CLK3-201ENST00000345005 FRAT2O75474 233 aaPredicted RBP15.83■□□□□ 0.12
CLK3-201ENST00000345005 NGLY1Q96IV0 654 aa15.83■□□□□ 0.12
CLK3-201ENST00000345005 METTL22Q9BUU2 404 aaPredicted RBP15.83■□□□□ 0.12
CLK3-201ENST00000345005 PNMA6EA0A0J9YXQ4 647 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms