RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 A1BGP04217 495 aa28.58■■■□□ 2.17
SDC3-202ENST00000339394 TJP1Q07157 1748 aa28.58■■■□□ 2.17
SDC3-202ENST00000339394 INTS5Q6P9B9 1019 aaKnown RBP28.58■■■□□ 2.17
SDC3-202ENST00000339394 RC3H1Q5TC82 1133 aaKnown RBP28.57■■■□□ 2.16
SDC3-202ENST00000339394 CNTNAP4Q9C0A0 1308 aa28.57■■■□□ 2.16
SDC3-202ENST00000339394 CICQ96RK0 1608 aaPredicted RBP28.56■■■□□ 2.16
SDC3-202ENST00000339394 SOCS7O14512 581 aa28.56■■■□□ 2.16
SDC3-202ENST00000339394 CCDC87Q9NVE4 849 aa28.56■■■□□ 2.16
SDC3-202ENST00000339394 ZBTB1Q9Y2K1 713 aa28.56■■■□□ 2.16
SDC3-202ENST00000339394 C5P01031 1676 aa28.55■■■□□ 2.16
SDC3-202ENST00000339394 CT47B1P0C2W7 299 aaPredicted RBP28.55■■■□□ 2.16
SDC3-202ENST00000339394 CHMP4AQ9BY43 222 aa28.55■■■□□ 2.16
SDC3-202ENST00000339394 PIP4K2AP48426 406 aaPredicted RBP28.54■■■□□ 2.16
SDC3-202ENST00000339394 CCDC30Q5VVM6 783 aa28.54■■■□□ 2.16
SDC3-202ENST00000339394 NBPF26B4DH59 902 aa28.54■■■□□ 2.16
SDC3-202ENST00000339394 ZNF827Q17R98 1081 aa28.54■■■□□ 2.16
SDC3-202ENST00000339394 NBPF14Q5TI25 921 aa28.54■■■□□ 2.16
SDC3-202ENST00000339394 NBPF10Q6P3W6 841 aaKnown RBP28.54■■■□□ 2.16
SDC3-202ENST00000339394 NBPF15Q8N660 670 aa28.54■■■□□ 2.16
SDC3-202ENST00000339394 AKT1S1Q96B36 256 aa28.54■■■□□ 2.16
SDC3-202ENST00000339394 AK7Q96M32 723 aa28.54■■■□□ 2.16
SDC3-202ENST00000339394 CANXP27824 592 aaKnown RBP28.53■■■□□ 2.16
SDC3-202ENST00000339394 PDIA6Q15084 440 aa28.53■■■□□ 2.16
SDC3-202ENST00000339394 ANO8Q9HCE9 1232 aaPredicted RBP28.53■■■□□ 2.16
SDC3-202ENST00000339394 CHPF2Q9P2E5 772 aa28.53■■■□□ 2.16
SDC3-202ENST00000339394 TCERG1O14776 1098 aaKnown RBP28.52■■■□□ 2.16
SDC3-202ENST00000339394 RREB1Q92766 1687 aa28.51■■■□□ 2.15
SDC3-202ENST00000339394 GNPATO15228 680 aa28.51■■■□□ 2.15
SDC3-202ENST00000339394 DBF4Q9UBU7 674 aaPredicted RBP28.51■■■□□ 2.15
SDC3-202ENST00000339394 ERBB4Q15303 1308 aa28.51■■■□□ 2.15
SDC3-202ENST00000339394 COL5A3P25940 1745 aaPredicted RBP28.51■■■□□ 2.15
SDC3-202ENST00000339394 PROSER3Q2NL68 480 aa28.5■■■□□ 2.15
SDC3-202ENST00000339394 ZNF428Q96B54 188 aa28.5■■■□□ 2.15
SDC3-202ENST00000339394 C4BP0C0L5 1744 aa28.5■■■□□ 2.15
SDC3-202ENST00000339394 ANXA1P04083 346 aa28.5■■■□□ 2.15
SDC3-202ENST00000339394 MYL6BP14649 208 aa28.5■■■□□ 2.15
SDC3-202ENST00000339394 AMIGO3Q86WK7 504 aa28.5■■■□□ 2.15
SDC3-202ENST00000339394 DDX21Q9NR30 783 aaKnown RBP eCLIP28.5■■■□□ 2.15
SDC3-202ENST00000339394 RPS6KA4O75676 772 aa28.49■■■□□ 2.15
SDC3-202ENST00000339394 SLC15A2Q16348 729 aa28.49■■■□□ 2.15
SDC3-202ENST00000339394 TAF1LQ8IZX4 1826 aa28.49■■■□□ 2.15
SDC3-202ENST00000339394 STK32BQ9NY57 414 aa28.49■■■□□ 2.15
SDC3-202ENST00000339394 TFCP2L1Q9NZI6 479 aa28.49■■■□□ 2.15
SDC3-202ENST00000339394 RTCBQ9Y3I0 505 aaKnown RBP28.49■■■□□ 2.15
SDC3-202ENST00000339394 IL6STP40189 918 aaPredicted RBP28.48■■■□□ 2.15
SDC3-202ENST00000339394 SMIM5Q71RC9 77 aa28.48■■■□□ 2.15
SDC3-202ENST00000339394 STK31Q9BXU1 1019 aa28.48■■■□□ 2.15
SDC3-202ENST00000339394 EIF5P55010 431 aaKnown RBP28.47■■■□□ 2.15
SDC3-202ENST00000339394 LRP10Q7Z4F1 713 aa28.47■■■□□ 2.15
SDC3-202ENST00000339394 LAMB4A4D0S4 1761 aa28.47■■■□□ 2.15
SDC3-202ENST00000339394 NUP188Q5SRE5 1749 aa28.46■■■□□ 2.15
SDC3-202ENST00000339394 SLC4A2P04920 1241 aa28.46■■■□□ 2.15
SDC3-202ENST00000339394 SSH1Q8WYL5 1049 aa28.46■■■□□ 2.15
SDC3-202ENST00000339394 ZNF330Q9Y3S2 320 aaPredicted RBP28.46■■■□□ 2.15
SDC3-202ENST00000339394 RARSP54136 660 aaKnown RBP28.45■■■□□ 2.15
SDC3-202ENST00000339394 MYH14Q7Z406 1995 aaKnown RBP28.45■■■□□ 2.14
SDC3-202ENST00000339394 PHF14O94880 888 aa28.44■■■□□ 2.14
SDC3-202ENST00000339394 ALDH1L2Q3SY69 923 aa28.44■■■□□ 2.14
SDC3-202ENST00000339394 BCL2L13Q9BXK5 485 aa28.44■■■□□ 2.14
SDC3-202ENST00000339394 HYPKQ9NX55 129 aa28.44■■■□□ 2.14
SDC3-202ENST00000339394 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.43■■■□□ 2.14
SDC3-202ENST00000339394 SSFA2P28290 1259 aa28.43■■■□□ 2.14
SDC3-202ENST00000339394 NPM2Q86SE8 214 aaKnown RBP28.43■■■□□ 2.14
SDC3-202ENST00000339394 TRAPPC3LQ5T215 181 aa28.42■■■□□ 2.14
SDC3-202ENST00000339394 PHAXQ9H814 394 aaKnown RBP28.41■■■□□ 2.14
SDC3-202ENST00000339394 SMC4Q9NTJ3 1288 aa28.41■■■□□ 2.14
SDC3-202ENST00000339394 ADRA2BP18089 450 aa28.41■■■□□ 2.14
SDC3-202ENST00000339394 MRPL50Q8N5N7 158 aaKnown RBP28.41■■■□□ 2.14
SDC3-202ENST00000339394 ARHGEF1Q92888 912 aaKnown RBP28.41■■■□□ 2.14
SDC3-202ENST00000339394 COL15A1P39059 1388 aa28.4■■■□□ 2.14
SDC3-202ENST00000339394 COPS6Q7L5N1 327 aa28.4■■■□□ 2.14
SDC3-202ENST00000339394 PNPLA7Q6ZV29 1317 aa28.39■■■□□ 2.14
SDC3-202ENST00000339394 AIMP1Q12904 312 aaKnown RBP28.39■■■□□ 2.14
SDC3-202ENST00000339394 G2E3Q7L622 706 aa28.39■■■□□ 2.14
SDC3-202ENST00000339394 XAGE3Q8WTP9 111 aa28.39■■■□□ 2.14
SDC3-202ENST00000339394 ARXQ96QS3 562 aa28.39■■■□□ 2.14
SDC3-202ENST00000339394 BCAR3O75815 825 aa28.38■■■□□ 2.13
SDC3-202ENST00000339394 FLAD1Q8NFF5 587 aa28.38■■■□□ 2.13
SDC3-202ENST00000339394 RCAN3Q9UKA8 241 aa28.38■■■□□ 2.13
SDC3-202ENST00000339394 TBC1D2BQ9UPU7 963 aa28.38■■■□□ 2.13
SDC3-202ENST00000339394 A0A087WZG4 1122 aa28.37■■■□□ 2.13
SDC3-202ENST00000339394 TTLL7Q6ZT98 887 aa28.37■■■□□ 2.13
SDC3-202ENST00000339394 COL23A1Q86Y22 540 aaPredicted RBP28.37■■■□□ 2.13
SDC3-202ENST00000339394 RFC4P35249 363 aa28.36■■■□□ 2.13
SDC3-202ENST00000339394 FLIIQ13045 1269 aa28.36■■■□□ 2.13
SDC3-202ENST00000339394 DZIP3Q86Y13 1208 aaKnown RBP28.36■■■□□ 2.13
SDC3-202ENST00000339394 BRPF1P55201 1214 aaPredicted RBP28.35■■■□□ 2.13
SDC3-202ENST00000339394 R3HDM1Q15032 1099 aaKnown RBP28.35■■■□□ 2.13
SDC3-202ENST00000339394 MSH5O43196 834 aa28.33■■■□□ 2.13
SDC3-202ENST00000339394 UBR3Q6ZT12 1888 aa28.33■■■□□ 2.13
SDC3-202ENST00000339394 KIF6Q6ZMV9 814 aa28.33■■■□□ 2.12
SDC3-202ENST00000339394 PDGFDQ9GZP0 370 aaPredicted RBP28.33■■■□□ 2.12
SDC3-202ENST00000339394 SRP68Q9UHB9 627 aaKnown RBP28.33■■■□□ 2.12
SDC3-202ENST00000339394 NARFQ9UHQ1 456 aa28.33■■■□□ 2.12
SDC3-202ENST00000339394 ZPR1O75312 459 aa28.32■■■□□ 2.12
SDC3-202ENST00000339394 CAMTA2O94983 1202 aa28.32■■■□□ 2.12
SDC3-202ENST00000339394 ANKRD13DQ6ZTN6 518 aa28.32■■■□□ 2.12
SDC3-202ENST00000339394 FKBP5Q13451 457 aaPredicted RBP28.31■■■□□ 2.12
SDC3-202ENST00000339394 ZBTB3Q9H5J0 574 aa28.31■■■□□ 2.12
SDC3-202ENST00000339394 NOB1Q9ULX3 412 aaKnown RBP28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms