RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 LY75O60449 1722 aa13.55□□□□□ -0.24
RTN3-201ENST00000338850 N4BP2Q86UW6 1770 aaPredicted RBP13.55□□□□□ -0.24
RTN3-201ENST00000338850 ZNF853P0CG23 659 aa13.54□□□□□ -0.24
RTN3-201ENST00000338850 YY1P25490 414 aa13.54□□□□□ -0.24
RTN3-201ENST00000338850 GNAI1P63096 354 aa13.54□□□□□ -0.24
RTN3-201ENST00000338850 SLC16A10Q8TF71 515 aa13.54□□□□□ -0.24
RTN3-201ENST00000338850 ARXQ96QS3 562 aa13.54□□□□□ -0.24
RTN3-201ENST00000338850 SYT17Q9BSW7 474 aa13.54□□□□□ -0.24
RTN3-201ENST00000338850 ANTXR1Q9H6X2 564 aa13.54□□□□□ -0.24
RTN3-201ENST00000338850 CCNL1Q9UK58 526 aaPredicted RBP13.54□□□□□ -0.24
RTN3-201ENST00000338850 QSER1Q2KHR3 1735 aa13.53□□□□□ -0.24
RTN3-201ENST00000338850 CFAP44Q96MT7 982 aa13.53□□□□□ -0.24
RTN3-201ENST00000338850 TFCP2L1Q9NZI6 479 aa13.53□□□□□ -0.24
RTN3-201ENST00000338850 IL13P35225 146 aa13.52□□□□□ -0.25
RTN3-201ENST00000338850 TSR2Q969E8 191 aaKnown RBP13.52□□□□□ -0.25
RTN3-201ENST00000338850 GCC1Q96CN9 775 aa13.52□□□□□ -0.25
RTN3-201ENST00000338850 EYA1Q99502 592 aa13.52□□□□□ -0.25
RTN3-201ENST00000338850 TNNQ9UQP3 1299 aa13.52□□□□□ -0.25
RTN3-201ENST00000338850 ABCC4O15439 1325 aa13.52□□□□□ -0.25
RTN3-201ENST00000338850 MAP3K5Q99683 1374 aa13.52□□□□□ -0.25
RTN3-201ENST00000338850 PKD1L3Q7Z443 1732 aa13.52□□□□□ -0.25
RTN3-201ENST00000338850 CACNA1FO60840 1977 aa13.52□□□□□ -0.25
RTN3-201ENST00000338850 BCL2L13Q9BXK5 485 aa13.51□□□□□ -0.25
RTN3-201ENST00000338850 TUBGCP6Q96RT7 1819 aa13.5□□□□□ -0.25
RTN3-201ENST00000338850 TOGARAM1Q9Y4F4 1720 aa13.5□□□□□ -0.25
RTN3-201ENST00000338850 PALLDQ8WX93 1383 aa13.5□□□□□ -0.25
RTN3-201ENST00000338850 PRKAR2BP31323 418 aa13.5□□□□□ -0.25
RTN3-201ENST00000338850 NUCB1Q02818 461 aa13.5□□□□□ -0.25
RTN3-201ENST00000338850 EIF4A2Q14240 407 aaKnown RBP13.5□□□□□ -0.25
RTN3-201ENST00000338850 NKX1-1Q15270 411 aaPredicted RBP13.5□□□□□ -0.25
RTN3-201ENST00000338850 MPRIPQ6WCQ1 1025 aa13.5□□□□□ -0.25
RTN3-201ENST00000338850 NOB1Q9ULX3 412 aaKnown RBP13.5□□□□□ -0.25
RTN3-201ENST00000338850 SPG7Q9UQ90 795 aa13.5□□□□□ -0.25
RTN3-201ENST00000338850 SEC24BO95487 1268 aa13.49□□□□□ -0.25
RTN3-201ENST00000338850 RBM25P49756 843 aaKnown RBP13.49□□□□□ -0.25
RTN3-201ENST00000338850 BMP2KLQ5H9B9 411 aa13.49□□□□□ -0.25
RTN3-201ENST00000338850 ITPRIPQ8IWB1 547 aa13.49□□□□□ -0.25
RTN3-201ENST00000338850 TMEM57Q8N5G2 664 aa13.49□□□□□ -0.25
RTN3-201ENST00000338850 SNX21Q969T3 373 aa13.49□□□□□ -0.25
RTN3-201ENST00000338850 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.49□□□□□ -0.25
RTN3-201ENST00000338850 COL24A1Q17RW2 1714 aa13.49□□□□□ -0.25
RTN3-201ENST00000338850 VAMP4O75379 141 aa13.48□□□□□ -0.25
RTN3-201ENST00000338850 POLD1P28340 1107 aa13.48□□□□□ -0.25
RTN3-201ENST00000338850 COL23A1Q86Y22 540 aaPredicted RBP13.48□□□□□ -0.25
RTN3-201ENST00000338850 MRPL50Q8N5N7 158 aaKnown RBP13.48□□□□□ -0.25
RTN3-201ENST00000338850 PIGBQ92521 554 aa13.48□□□□□ -0.25
RTN3-201ENST00000338850 API5Q9BZZ5 524 aaKnown RBP13.48□□□□□ -0.25
RTN3-201ENST00000338850 SMARCC1Q92922 1105 aaPredicted RBP13.47□□□□□ -0.25
RTN3-201ENST00000338850 TBC1D2Q9BYX2 928 aa13.47□□□□□ -0.25
RTN3-201ENST00000338850 PLEKHG2Q9H7P9 1386 aa13.46□□□□□ -0.25
RTN3-201ENST00000338850 IGSF1Q8N6C5 1336 aa13.46□□□□□ -0.25
RTN3-201ENST00000338850 PHKG2P15735 406 aa13.46□□□□□ -0.25
RTN3-201ENST00000338850 SLC4A3P48751 1232 aa13.46□□□□□ -0.25
RTN3-201ENST00000338850 C22orf23Q9BZE7 217 aa13.46□□□□□ -0.25
RTN3-201ENST00000338850 CIZ1Q9ULV3 898 aaPredicted RBP13.46□□□□□ -0.25
RTN3-201ENST00000338850 C5P01031 1676 aa13.46□□□□□ -0.26
RTN3-201ENST00000338850 ZBTB7BO15156 539 aaPredicted RBP13.45□□□□□ -0.26
RTN3-201ENST00000338850 FRAT2O75474 233 aaPredicted RBP13.45□□□□□ -0.26
RTN3-201ENST00000338850 HMGB2P26583 209 aaKnown RBP13.45□□□□□ -0.26
RTN3-201ENST00000338850 IFNL2Q8IZJ0 200 aa13.45□□□□□ -0.26
RTN3-201ENST00000338850 ITGB4P16144 1822 aa13.45□□□□□ -0.26
RTN3-201ENST00000338850 CHD1LQ86WJ1 897 aa13.44□□□□□ -0.26
RTN3-201ENST00000338850 KLHL34Q8N239 644 aa13.44□□□□□ -0.26
RTN3-201ENST00000338850 CHMP5Q9NZZ3 219 aa13.44□□□□□ -0.26
RTN3-201ENST00000338850 ISY1Q9ULR0 285 aaKnown RBP13.44□□□□□ -0.26
RTN3-201ENST00000338850 MSL1Q68DK7 614 aa13.43□□□□□ -0.26
RTN3-201ENST00000338850 FLAD1Q8NFF5 587 aa13.43□□□□□ -0.26
RTN3-201ENST00000338850 TMOD3Q9NYL9 352 aa13.43□□□□□ -0.26
RTN3-201ENST00000338850 TAF1LQ8IZX4 1826 aa13.43□□□□□ -0.26
RTN3-201ENST00000338850 C4BP0C0L5 1744 aa13.42□□□□□ -0.26
RTN3-201ENST00000338850 LOC102724428A0A0B4J2F2 783 aa13.42□□□□□ -0.26
RTN3-201ENST00000338850 PTMSP20962 102 aa13.42□□□□□ -0.26
RTN3-201ENST00000338850 SIK1P57059 783 aa13.42□□□□□ -0.26
RTN3-201ENST00000338850 L1TD1Q5T7N2 865 aaKnown RBP13.42□□□□□ -0.26
RTN3-201ENST00000338850 AMIGO3Q86WK7 504 aa13.42□□□□□ -0.26
RTN3-201ENST00000338850 NLGN2Q8NFZ4 835 aa13.42□□□□□ -0.26
RTN3-201ENST00000338850 AK7Q96M32 723 aa13.42□□□□□ -0.26
RTN3-201ENST00000338850 ASAP1Q9ULH1 1129 aa13.42□□□□□ -0.26
RTN3-201ENST00000338850 SOS1Q07889 1333 aaPredicted RBP13.41□□□□□ -0.26
RTN3-201ENST00000338850 DDIT3P35638 169 aa13.41□□□□□ -0.26
RTN3-201ENST00000338850 GPR162Q16538 588 aa13.41□□□□□ -0.26
RTN3-201ENST00000338850 INTS3Q68E01 1043 aaKnown RBP13.41□□□□□ -0.26
RTN3-201ENST00000338850 LINC00116Q8NCU8 138 aa13.41□□□□□ -0.26
RTN3-201ENST00000338850 MBIPQ9NS73 344 aa13.41□□□□□ -0.26
RTN3-201ENST00000338850 KDRP35968 1356 aa13.41□□□□□ -0.26
RTN3-201ENST00000338850 PTPRCP08575 1304 aa13.4□□□□□ -0.26
RTN3-201ENST00000338850 ATP10DQ9P241 1426 aa13.4□□□□□ -0.26
RTN3-201ENST00000338850 ITPK1Q13572 414 aa13.4□□□□□ -0.26
RTN3-201ENST00000338850 TWISTNBQ3B726 338 aaPredicted RBP13.4□□□□□ -0.26
RTN3-201ENST00000338850 PLEKHO1Q53GL0 409 aaPredicted RBP13.4□□□□□ -0.26
RTN3-201ENST00000338850 SMIM5Q71RC9 77 aa13.4□□□□□ -0.26
RTN3-201ENST00000338850 HSCBQ8IWL3 235 aa13.4□□□□□ -0.26
RTN3-201ENST00000338850 PHACTR3Q96KR7 559 aa13.4□□□□□ -0.26
RTN3-201ENST00000338850 ATG3Q9NT62 314 aa13.4□□□□□ -0.26
RTN3-201ENST00000338850 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.39□□□□□ -0.27
RTN3-201ENST00000338850 ZNF530Q6P9A1 599 aaPredicted RBP13.39□□□□□ -0.27
RTN3-201ENST00000338850 AEBP1Q8IUX7 1158 aa13.39□□□□□ -0.27
RTN3-201ENST00000338850 ZNF784Q8NCA9 323 aaPredicted RBP13.39□□□□□ -0.27
RTN3-201ENST00000338850 DCAF5Q96JK2 942 aa13.39□□□□□ -0.27
RTN3-201ENST00000338850 KDM6AO15550 1401 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms