RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 NBPF14Q5TI25 921 aa21.3■■□□□ 1
SHOX-201ENST00000334060 NBPF10Q6P3W6 841 aaKnown RBP21.3■■□□□ 1
SHOX-201ENST00000334060 NBPF15Q8N660 670 aa21.3■■□□□ 1
SHOX-201ENST00000334060 RCAN3Q9UKA8 241 aa21.3■■□□□ 1
SHOX-201ENST00000334060 EZH2Q15910 746 aaKnown RBP21.29■■□□□ 1
SHOX-201ENST00000334060 PHAXQ9H814 394 aaKnown RBP21.29■■□□□ 1
SHOX-201ENST00000334060 CCNL1Q9UK58 526 aaPredicted RBP21.29■■□□□ 1
SHOX-201ENST00000334060 MYH14Q7Z406 1995 aaKnown RBP21.28■■□□□ 1
SHOX-201ENST00000334060 LAMB4A4D0S4 1761 aa21.28■■□□□ 1
SHOX-201ENST00000334060 CYP19A1P11511 503 aaPredicted RBP21.28■■□□□ 1
SHOX-201ENST00000334060 MYL6BP14649 208 aa21.28■■□□□ 1
SHOX-201ENST00000334060 ZBTB1Q9Y2K1 713 aa21.28■■□□□ 1
SHOX-201ENST00000334060 TXNRD1Q16881 649 aa21.27■■□□□ 1
SHOX-201ENST00000334060 SUPT16HQ9Y5B9 1047 aaKnown RBP21.27■■□□□ 1
SHOX-201ENST00000334060 LRP10Q7Z4F1 713 aa21.27■□□□□ 0.99
SHOX-201ENST00000334060 COL5A3P25940 1745 aaPredicted RBP21.26■□□□□ 0.99
SHOX-201ENST00000334060 MRPL50Q8N5N7 158 aaKnown RBP21.26■□□□□ 0.99
SHOX-201ENST00000334060 SMARCC1Q92922 1105 aaPredicted RBP21.26■□□□□ 0.99
SHOX-201ENST00000334060 SMC4Q9NTJ3 1288 aa21.26■□□□□ 0.99
SHOX-201ENST00000334060 TAF1LQ8IZX4 1826 aa21.25■□□□□ 0.99
SHOX-201ENST00000334060 SLC4A2P04920 1241 aa21.25■□□□□ 0.99
SHOX-201ENST00000334060 CANXP27824 592 aaKnown RBP21.25■□□□□ 0.99
SHOX-201ENST00000334060 CRKLP46109 303 aaKnown RBP21.25■□□□□ 0.99
SHOX-201ENST00000334060 INTS5Q6P9B9 1019 aaKnown RBP21.25■□□□□ 0.99
SHOX-201ENST00000334060 ZNF428Q96B54 188 aa21.25■□□□□ 0.99
SHOX-201ENST00000334060 CAMKK2Q96RR4 588 aa21.24■□□□□ 0.99
SHOX-201ENST00000334060 ZNF330Q9Y3S2 320 aaPredicted RBP21.24■□□□□ 0.99
SHOX-201ENST00000334060 IRX6P78412 446 aaPredicted RBP21.23■□□□□ 0.99
SHOX-201ENST00000334060 C20orf194Q5TEA3 1177 aa21.23■□□□□ 0.99
SHOX-201ENST00000334060 VSIG10Q8N0Z9 540 aa21.23■□□□□ 0.99
SHOX-201ENST00000334060 UPF1Q92900 1129 aaKnown RBP eCLIP21.23■□□□□ 0.99
SHOX-201ENST00000334060 FRAT1Q92837 279 aaPredicted RBP21.23■□□□□ 0.99
SHOX-201ENST00000334060 ZNF827Q17R98 1081 aa21.22■□□□□ 0.99
SHOX-201ENST00000334060 PLSCR1O15162 318 aa21.21■□□□□ 0.99
SHOX-201ENST00000334060 ANO8Q9HCE9 1232 aaPredicted RBP21.21■□□□□ 0.99
SHOX-201ENST00000334060 NOB1Q9ULX3 412 aaKnown RBP21.21■□□□□ 0.99
SHOX-201ENST00000334060 CICQ96RK0 1608 aaPredicted RBP21.21■□□□□ 0.99
SHOX-201ENST00000334060 HOXB7P09629 217 aa21.21■□□□□ 0.99
SHOX-201ENST00000334060 AIMP1Q12904 312 aaKnown RBP21.21■□□□□ 0.99
SHOX-201ENST00000334060 CCDC30Q5VVM6 783 aa21.2■□□□□ 0.98
SHOX-201ENST00000334060 TTLL7Q6ZT98 887 aa21.2■□□□□ 0.98
SHOX-201ENST00000334060 C4BP0C0L5 1744 aa21.2■□□□□ 0.98
SHOX-201ENST00000334060 F6X3S4 739 aa21.19■□□□□ 0.98
SHOX-201ENST00000334060 CLUAP1Q96AJ1 413 aa21.19■□□□□ 0.98
SHOX-201ENST00000334060 ZNF831Q5JPB2 1677 aa21.18■□□□□ 0.98
SHOX-201ENST00000334060 RLBP1P12271 317 aa21.17■□□□□ 0.98
SHOX-201ENST00000334060 XAGE3Q8WTP9 111 aa21.17■□□□□ 0.98
SHOX-201ENST00000334060 DDX21Q9NR30 783 aaKnown RBP eCLIP21.17■□□□□ 0.98
SHOX-201ENST00000334060 CCDC87Q9NVE4 849 aa21.17■□□□□ 0.98
SHOX-201ENST00000334060 RREB1Q92766 1687 aa21.17■□□□□ 0.98
SHOX-201ENST00000334060 PHF14O94880 888 aa21.17■□□□□ 0.98
SHOX-201ENST00000334060 CT47B1P0C2W7 299 aaPredicted RBP21.17■□□□□ 0.98
SHOX-201ENST00000334060 ALDH1L2Q3SY69 923 aa21.17■□□□□ 0.98
SHOX-201ENST00000334060 STARD3NLO95772 234 aa21.16■□□□□ 0.98
SHOX-201ENST00000334060 FLIIQ13045 1269 aa21.16■□□□□ 0.98
SHOX-201ENST00000334060 COPS6Q7L5N1 327 aa21.16■□□□□ 0.98
SHOX-201ENST00000334060 DBF4Q9UBU7 674 aaPredicted RBP21.16■□□□□ 0.98
SHOX-201ENST00000334060 GNPATO15228 680 aa21.16■□□□□ 0.98
SHOX-201ENST00000334060 STK31Q9BXU1 1019 aa21.16■□□□□ 0.98
SHOX-201ENST00000334060 TRIM27P14373 513 aa21.15■□□□□ 0.98
SHOX-201ENST00000334060 RRP1P56182 461 aaKnown RBP21.15■□□□□ 0.98
SHOX-201ENST00000334060 TBC1D2BQ9UPU7 963 aa21.15■□□□□ 0.98
SHOX-201ENST00000334060 NUP188Q5SRE5 1749 aa21.15■□□□□ 0.98
SHOX-201ENST00000334060 PANK1Q8TE04 598 aa21.14■□□□□ 0.98
SHOX-201ENST00000334060 PDGFDQ9GZP0 370 aaPredicted RBP21.14■□□□□ 0.98
SHOX-201ENST00000334060 TUBGCP6Q96RT7 1819 aa21.14■□□□□ 0.97
SHOX-201ENST00000334060 ADCY9O60503 1353 aa21.14■□□□□ 0.97
SHOX-201ENST00000334060 SF3B2Q13435 895 aaKnown RBP21.14■□□□□ 0.97
SHOX-201ENST00000334060 ARXQ96QS3 562 aa21.14■□□□□ 0.97
SHOX-201ENST00000334060 BAG6P46379 1132 aa21.13■□□□□ 0.97
SHOX-201ENST00000334060 SLC27A3Q5K4L6 730 aa21.13■□□□□ 0.97
SHOX-201ENST00000334060 ZBTB3Q9H5J0 574 aa21.13■□□□□ 0.97
SHOX-201ENST00000334060 SOS1Q07889 1333 aaPredicted RBP21.13■□□□□ 0.97
SHOX-201ENST00000334060 CNTNAP4Q9C0A0 1308 aa21.13■□□□□ 0.97
SHOX-201ENST00000334060 RGPD3A6NKT7 1758 aaPredicted RBP21.13■□□□□ 0.97
SHOX-201ENST00000334060 RGPD4Q7Z3J3 1758 aa21.13■□□□□ 0.97
SHOX-201ENST00000334060 EIF5P55010 431 aaKnown RBP21.12■□□□□ 0.97
SHOX-201ENST00000334060 TEX13AQ9BXU3 409 aaPredicted RBP21.12■□□□□ 0.97
SHOX-201ENST00000334060 SRP68Q9UHB9 627 aaKnown RBP21.12■□□□□ 0.97
SHOX-201ENST00000334060 RNF123Q5XPI4 1314 aa21.12■□□□□ 0.97
SHOX-201ENST00000334060 FKBP5Q13451 457 aaPredicted RBP21.12■□□□□ 0.97
SHOX-201ENST00000334060 AKT1S1Q96B36 256 aa21.12■□□□□ 0.97
SHOX-201ENST00000334060 SRCAPQ6ZRS2 3230 aa21.11■□□□□ 0.97
SHOX-201ENST00000334060 UBR3Q6ZT12 1888 aa21.11■□□□□ 0.97
SHOX-201ENST00000334060 HLFQ16534 295 aa21.11■□□□□ 0.97
SHOX-201ENST00000334060 PI4KAP2A4QPH2 592 aa21.1■□□□□ 0.97
SHOX-201ENST00000334060 PI4KAP1Q8N8J0 262 aa21.1■□□□□ 0.97
SHOX-201ENST00000334060 COL15A1P39059 1388 aa21.1■□□□□ 0.97
SHOX-201ENST00000334060 AK7Q96M32 723 aa21.09■□□□□ 0.97
SHOX-201ENST00000334060 HYPKQ9NX55 129 aa21.09■□□□□ 0.97
SHOX-201ENST00000334060 C4AP0C0L4 1744 aa21.09■□□□□ 0.97
SHOX-201ENST00000334060 BRPF1P55201 1214 aaPredicted RBP21.08■□□□□ 0.97
SHOX-201ENST00000334060 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.08■□□□□ 0.96
SHOX-201ENST00000334060 IL6STP40189 918 aaPredicted RBP21.08■□□□□ 0.96
SHOX-201ENST00000334060 ATF7IPQ6VMQ6 1270 aa21.08■□□□□ 0.96
SHOX-201ENST00000334060 ARHGEF1Q92888 912 aaKnown RBP21.08■□□□□ 0.96
SHOX-201ENST00000334060 MAP3K2Q9Y2U5 619 aa21.08■□□□□ 0.96
SHOX-201ENST00000334060 RPS6KA4O75676 772 aa21.07■□□□□ 0.96
SHOX-201ENST00000334060 ERBB4Q15303 1308 aa21.07■□□□□ 0.96
SHOX-201ENST00000334060 SLC4A10Q6U841 1118 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms