RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 HDGFL1Q5TGJ6 251 aa19.68■□□□□ 0.74
USHBP1-202ENST00000324554 ZNF530Q6P9A1 599 aaPredicted RBP19.68■□□□□ 0.74
USHBP1-202ENST00000324554 CSB-PGBD3P0DP91 1061 aa19.68■□□□□ 0.74
USHBP1-202ENST00000324554 MX1P20591 662 aa19.68■□□□□ 0.74
USHBP1-202ENST00000324554 USP44Q9H0E7 712 aa19.68■□□□□ 0.74
USHBP1-202ENST00000324554 ST18O60284 1047 aa19.67■□□□□ 0.74
USHBP1-202ENST00000324554 GOLGA6L22H0YM25 854 aa19.67■□□□□ 0.74
USHBP1-202ENST00000324554 CYP2E1P05181 493 aaPredicted RBP19.67■□□□□ 0.74
USHBP1-202ENST00000324554 ERBB4Q15303 1308 aa19.67■□□□□ 0.74
USHBP1-202ENST00000324554 KLHL40Q2TBA0 621 aa19.66■□□□□ 0.74
USHBP1-202ENST00000324554 PHAXQ9H814 394 aaKnown RBP19.66■□□□□ 0.74
USHBP1-202ENST00000324554 DDX49Q9Y6V7 483 aaKnown RBP19.66■□□□□ 0.74
USHBP1-202ENST00000324554 UBTFL1P0CB47 393 aaPredicted RBP19.65■□□□□ 0.74
USHBP1-202ENST00000324554 ZGPATQ8N5A5 531 aaKnown RBP19.65■□□□□ 0.74
USHBP1-202ENST00000324554 PLEKHO1Q53GL0 409 aaPredicted RBP19.64■□□□□ 0.74
USHBP1-202ENST00000324554 MCTP1Q6DN14 999 aa19.64■□□□□ 0.74
USHBP1-202ENST00000324554 NUCB2P80303 420 aa19.64■□□□□ 0.73
USHBP1-202ENST00000324554 ESYT1Q9BSJ8 1104 aa19.64■□□□□ 0.73
USHBP1-202ENST00000324554 STAP2Q9UGK3 403 aa19.64■□□□□ 0.73
USHBP1-202ENST00000324554 PHRF1Q9P1Y6 1649 aaKnown RBP19.64■□□□□ 0.73
USHBP1-202ENST00000324554 EIF4A1P60842 406 aaKnown RBP19.63■□□□□ 0.73
USHBP1-202ENST00000324554 ESPNB1AK53 854 aa19.62■□□□□ 0.73
USHBP1-202ENST00000324554 KCNQ3O43525 872 aa19.62■□□□□ 0.73
USHBP1-202ENST00000324554 SSH3Q8TE77 659 aa19.62■□□□□ 0.73
USHBP1-202ENST00000324554 SRCIN1Q9C0H9 1055 aa19.62■□□□□ 0.73
USHBP1-202ENST00000324554 KDM3BQ7LBC6 1761 aa19.62■□□□□ 0.73
USHBP1-202ENST00000324554 EIF2S2P20042 333 aaKnown RBP19.62■□□□□ 0.73
USHBP1-202ENST00000324554 CWC22Q9HCG8 908 aaKnown RBP19.62■□□□□ 0.73
USHBP1-202ENST00000324554 C1orf141Q5JVX7 400 aa19.61■□□□□ 0.73
USHBP1-202ENST00000324554 LMBRD1Q9NUN5 540 aa19.61■□□□□ 0.73
USHBP1-202ENST00000324554 SOS2Q07890 1332 aaPredicted RBP19.61■□□□□ 0.73
USHBP1-202ENST00000324554 HOXB7P09629 217 aa19.61■□□□□ 0.73
USHBP1-202ENST00000324554 CHMLP26374 656 aa19.61■□□□□ 0.73
USHBP1-202ENST00000324554 PRDM11Q9NQV5 511 aa19.61■□□□□ 0.73
USHBP1-202ENST00000324554 ZDHHC9Q9Y397 364 aa19.61■□□□□ 0.73
USHBP1-202ENST00000324554 TRIM6-TRIM34B2RNG4 842 aa19.6■□□□□ 0.73
USHBP1-202ENST00000324554 AKAP4Q5JQC9 854 aa19.6■□□□□ 0.73
USHBP1-202ENST00000324554 RILPL2Q969X0 211 aa19.6■□□□□ 0.73
USHBP1-202ENST00000324554 RAPGEF4Q8WZA2 1011 aa19.6■□□□□ 0.73
USHBP1-202ENST00000324554 CHPF2Q9P2E5 772 aa19.6■□□□□ 0.73
USHBP1-202ENST00000324554 LMO7Q8WWI1 1683 aa19.59■□□□□ 0.73
USHBP1-202ENST00000324554 POLA2Q14181 598 aa19.59■□□□□ 0.73
USHBP1-202ENST00000324554 PPP1R42Q7Z4L9 355 aa19.59■□□□□ 0.73
USHBP1-202ENST00000324554 UNC5CLQ8IV45 518 aa19.59■□□□□ 0.73
USHBP1-202ENST00000324554 IL1RAPL2Q9NP60 686 aa19.59■□□□□ 0.73
USHBP1-202ENST00000324554 AOX1Q06278 1338 aa19.59■□□□□ 0.73
USHBP1-202ENST00000324554 TEFQ10587 303 aa19.59■□□□□ 0.73
USHBP1-202ENST00000324554 AMOTQ4VCS5 1084 aa19.59■□□□□ 0.73
USHBP1-202ENST00000324554 TRIM44Q96DX7 344 aaPredicted RBP19.59■□□□□ 0.73
USHBP1-202ENST00000324554 NASPP49321 788 aaPredicted RBP19.58■□□□□ 0.72
USHBP1-202ENST00000324554 NEK4P51957 841 aa19.57■□□□□ 0.72
USHBP1-202ENST00000324554 CAVIN1Q6NZI2 390 aaKnown RBP19.57■□□□□ 0.72
USHBP1-202ENST00000324554 CHAMP1Q96JM3 812 aa19.57■□□□□ 0.72
USHBP1-202ENST00000324554 RNMTO43148 476 aaKnown RBP19.57■□□□□ 0.72
USHBP1-202ENST00000324554 RAB11FIP3O75154 756 aa19.57■□□□□ 0.72
USHBP1-202ENST00000324554 NBPF7P0C2Y1 421 aaPredicted RBP19.57■□□□□ 0.72
USHBP1-202ENST00000324554 BEND3Q5T5X7 828 aa19.57■□□□□ 0.72
USHBP1-202ENST00000324554 ANO2Q9NQ90 1003 aa19.57■□□□□ 0.72
USHBP1-202ENST00000324554 PALD1Q9ULE6 856 aa19.57■□□□□ 0.72
USHBP1-202ENST00000324554 PI4KAP2A4QPH2 592 aa19.56■□□□□ 0.72
USHBP1-202ENST00000324554 BTBD11A6QL63 1104 aa19.56■□□□□ 0.72
USHBP1-202ENST00000324554 SURF6O75683 361 aaKnown RBP19.56■□□□□ 0.72
USHBP1-202ENST00000324554 NCLP19338 710 aaKnown RBP19.56■□□□□ 0.72
USHBP1-202ENST00000324554 PI4KAP1Q8N8J0 262 aa19.56■□□□□ 0.72
USHBP1-202ENST00000324554 DNAAF4Q8WXU2 420 aa19.56■□□□□ 0.72
USHBP1-202ENST00000324554 MCCP23508 829 aa19.56■□□□□ 0.72
USHBP1-202ENST00000324554 NAP1L5Q96NT1 182 aaPredicted RBP19.56■□□□□ 0.72
USHBP1-202ENST00000324554 STRN4Q9NRL3 753 aa19.56■□□□□ 0.72
USHBP1-202ENST00000324554 ZNF445P59923 1031 aa19.55■□□□□ 0.72
USHBP1-202ENST00000324554 ANAPC15P60006 121 aa19.55■□□□□ 0.72
USHBP1-202ENST00000324554 ZSCAN23Q3MJ62 389 aa19.55■□□□□ 0.72
USHBP1-202ENST00000324554 NUTM1Q86Y26 1132 aa19.55■□□□□ 0.72
USHBP1-202ENST00000324554 CHMP4AQ9BY43 222 aa19.55■□□□□ 0.72
USHBP1-202ENST00000324554 COL18A1P39060 1754 aa19.55■□□□□ 0.72
USHBP1-202ENST00000324554 SRGAP3O43295 1099 aa19.55■□□□□ 0.72
USHBP1-202ENST00000324554 TMX3Q96JJ7 454 aa19.55■□□□□ 0.72
USHBP1-202ENST00000324554 PRPF40AO75400 957 aaKnown RBP19.54■□□□□ 0.72
USHBP1-202ENST00000324554 TATP17735 454 aaPredicted RBP19.54■□□□□ 0.72
USHBP1-202ENST00000324554 RHPN1Q8TCX5 695 aa19.54■□□□□ 0.72
USHBP1-202ENST00000324554 PPP1R9BQ96SB3 815 aa19.54■□□□□ 0.72
USHBP1-202ENST00000324554 NCAPD2Q15021 1401 aa19.54■□□□□ 0.72
USHBP1-202ENST00000324554 ANXA1P04083 346 aa19.54■□□□□ 0.72
USHBP1-202ENST00000324554 MCM2P49736 904 aa19.54■□□□□ 0.72
USHBP1-202ENST00000324554 CCDC173Q0VFZ6 552 aa19.54■□□□□ 0.72
USHBP1-202ENST00000324554 TOM1L2Q6ZVM7 507 aa19.54■□□□□ 0.72
USHBP1-202ENST00000324554 GPT2Q8TD30 523 aa19.54■□□□□ 0.72
USHBP1-202ENST00000324554 ADCY9O60503 1353 aa19.54■□□□□ 0.72
USHBP1-202ENST00000324554 MEGF6O75095 1541 aa19.54■□□□□ 0.72
USHBP1-202ENST00000324554 IL25Q9H293 177 aa19.53■□□□□ 0.72
USHBP1-202ENST00000324554 PI4K2BQ8TCG2 481 aa19.53■□□□□ 0.72
USHBP1-202ENST00000324554 IL17RAQ96F46 866 aa19.53■□□□□ 0.72
USHBP1-202ENST00000324554 CRYBG1Q9Y4K1 1723 aa19.52■□□□□ 0.72
USHBP1-202ENST00000324554 KIF1BPQ96EK5 621 aa19.52■□□□□ 0.72
USHBP1-202ENST00000324554 PRAMEF22A3QJZ6 481 aa19.52■□□□□ 0.71
USHBP1-202ENST00000324554 RBM27Q9P2N5 1060 aaKnown RBP19.52■□□□□ 0.71
USHBP1-202ENST00000324554 PRKCSHP14314 528 aaPredicted RBP19.51■□□□□ 0.71
USHBP1-202ENST00000324554 SLC39A6Q13433 755 aa19.51■□□□□ 0.71
USHBP1-202ENST00000324554 FOXD4L5Q5VV16 416 aaPredicted RBP19.51■□□□□ 0.71
USHBP1-202ENST00000324554 FOXD4L4Q8WXT5 416 aaPredicted RBP19.51■□□□□ 0.71
USHBP1-202ENST00000324554 CPDO75976 1380 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms