RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 HSPA4P34932 840 aa8.2□□□□□ -1.1
SMC1A-201ENST00000322213 PSMD1Q99460 953 aa8.2□□□□□ -1.1
SMC1A-201ENST00000322213 TRMT1Q9NXH9 659 aaKnown RBP8.2□□□□□ -1.1
SMC1A-201ENST00000322213 CDKL5O76039 1030 aa8.2□□□□□ -1.1
SMC1A-201ENST00000322213 BRPF1P55201 1214 aaPredicted RBP8.2□□□□□ -1.1
SMC1A-201ENST00000322213 CTAGE9A4FU28 777 aa8.2□□□□□ -1.1
SMC1A-201ENST00000322213 TRAK1Q9UPV9 953 aa8.2□□□□□ -1.1
SMC1A-201ENST00000322213 KDM2BQ8NHM5 1336 aa8.2□□□□□ -1.1
SMC1A-201ENST00000322213 ANKRD36BQ8N2N9 1353 aa8.2□□□□□ -1.1
SMC1A-201ENST00000322213 VGFO15240 615 aaPredicted RBP8.2□□□□□ -1.1
SMC1A-201ENST00000322213 CLASRPQ8N2M8 674 aaKnown RBP8.2□□□□□ -1.1
SMC1A-201ENST00000322213 TSR2Q969E8 191 aaKnown RBP8.2□□□□□ -1.1
SMC1A-201ENST00000322213 ZNF165P49910 485 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 RNF187Q5TA31 235 aaPredicted RBP8.19□□□□□ -1.1
SMC1A-201ENST00000322213 MKRN1Q9UHC7 482 aaKnown RBP8.19□□□□□ -1.1
SMC1A-201ENST00000322213 A0A0G2JS52 829 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 HSP90AB2PQ58FF8 381 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 SYNJ2O15056 1496 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 EVPLQ92817 2033 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 TEX14Q8IWB6 1497 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 RSRC1Q96IZ7 334 aaKnown RBP8.19□□□□□ -1.1
SMC1A-201ENST00000322213 EBAG9O00559 213 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 PIP4K2BP78356 416 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 HDXQ7Z353 690 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 FSD1Q9BTV5 496 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 B4GALNT4Q76KP1 1039 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 DDX58O95786 925 aaKnown RBP8.19□□□□□ -1.1
SMC1A-201ENST00000322213 TUBBP07437 444 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 SKILP12757 684 aa8.19□□□□□ -1.1
SMC1A-201ENST00000322213 MSL1Q68DK7 614 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 CCDC50Q8IVM0 306 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 ZNF830Q96NB3 372 aaPredicted RBP8.18□□□□□ -1.1
SMC1A-201ENST00000322213 REREQ9P2R6 1566 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 EXOSC9Q06265 439 aaKnown RBP8.18□□□□□ -1.1
SMC1A-201ENST00000322213 POTEDQ86YR6 584 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 TTC12Q9H892 705 aaPredicted RBP8.18□□□□□ -1.1
SMC1A-201ENST00000322213 CTCFLQ8NI51 663 aaPredicted RBP8.18□□□□□ -1.1
SMC1A-201ENST00000322213 LIMCH1Q9UPQ0 1083 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 TDRD9Q8NDG6 1382 aaKnown RBP8.18□□□□□ -1.1
SMC1A-201ENST00000322213 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.18□□□□□ -1.1
SMC1A-201ENST00000322213 GTF3C6Q969F1 213 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 RAD54L2Q9Y4B4 1467 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 U2AF2P26368 475 aaKnown RBP eCLIP8.18□□□□□ -1.1
SMC1A-201ENST00000322213 ANO6Q4KMQ2 910 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 SECISBP2LQ93073 1101 aaKnown RBP8.18□□□□□ -1.1
SMC1A-201ENST00000322213 AMPHP49418 695 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 EFCAB2Q5VUJ9 269 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 GIGYF2Q6Y7W6 1299 aaKnown RBP8.18□□□□□ -1.1
SMC1A-201ENST00000322213 CNTRLQ7Z7A1 2325 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 A0A1B0GUA9 196 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 BLOC1S2Q6QNY1 142 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 CKAP2LQ8IYA6 745 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 ERO1AQ96HE7 468 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 MAP2K2P36507 400 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 SART3Q15020 963 aaKnown RBP8.18□□□□□ -1.1
SMC1A-201ENST00000322213 TWISTNBQ3B726 338 aaPredicted RBP8.18□□□□□ -1.1
SMC1A-201ENST00000322213 TMC6Q7Z403 805 aa8.18□□□□□ -1.1
SMC1A-201ENST00000322213 SAMD9Q5K651 1589 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 KIF1CO43896 1103 aaKnown RBP8.17□□□□□ -1.1
SMC1A-201ENST00000322213 SEPT7Q16181 437 aaKnown RBP8.17□□□□□ -1.1
SMC1A-201ENST00000322213 CCDC30Q5VVM6 783 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 SCAF11Q99590 1463 aaKnown RBP8.17□□□□□ -1.1
SMC1A-201ENST00000322213 ZNF526Q8TF50 670 aaPredicted RBP8.17□□□□□ -1.1
SMC1A-201ENST00000322213 NSD2O96028 1365 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 COL17A1Q9UMD9 1497 aaPredicted RBP8.17□□□□□ -1.1
SMC1A-201ENST00000322213 IGHDP01880 384 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 TRIM27P14373 513 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 A6NNZ2 444 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 TUBB8Q3ZCM7 444 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 SPECC1LQ69YQ0 1117 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 MICALL1Q8N3F8 863 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 JAKMIP1Q96N16 626 aaKnown RBP8.17□□□□□ -1.1
SMC1A-201ENST00000322213 KDM4AO75164 1064 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 MCM6Q14566 821 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 NBPF11Q86T75 865 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 TSPYL4Q9UJ04 414 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 GEMIN8Q9NWZ8 242 aaKnown RBP8.17□□□□□ -1.1
SMC1A-201ENST00000322213 RIOK3O14730 519 aaKnown RBP8.17□□□□□ -1.1
SMC1A-201ENST00000322213 RAI14Q9P0K7 980 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 ELP1O95163 1332 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 GRIN2BQ13224 1484 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 VPS18Q9P253 973 aa8.17□□□□□ -1.1
SMC1A-201ENST00000322213 PPP1R9BQ96SB3 815 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 MYH14Q7Z406 1995 aaKnown RBP8.16□□□□□ -1.1
SMC1A-201ENST00000322213 MARCH6O60337 910 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 CCDC175P0C221 793 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 MAP2K1Q02750 393 aaPredicted RBP8.16□□□□□ -1.1
SMC1A-201ENST00000322213 KIF4BQ2VIQ3 1234 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 ANAPC15P60006 121 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 CKAP4Q07065 602 aaKnown RBP8.16□□□□□ -1.1
SMC1A-201ENST00000322213 TTC22Q5TAA0 569 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 HSF2BPO75031 334 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 USP48Q86UV5 1035 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 PIK3C2GO75747 1445 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 NUP160Q12769 1436 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 ZSCAN22P10073 491 aaPredicted RBP8.16□□□□□ -1.1
SMC1A-201ENST00000322213 ANKRD18AQ8IVF6 992 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 PCM1Q15154 2024 aa8.16□□□□□ -1.1
SMC1A-201ENST00000322213 MPHOSPH10O00566 681 aaKnown RBP8.16□□□□□ -1.1
SMC1A-201ENST00000322213 ALS2CR12Q96Q35 445 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms