RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 SRP68Q9UHB9 627 aaKnown RBP35.01■■■■□ 3.2
CDKN2A-201ENST00000304494 NFE2L2Q16236 605 aa35■■■■□ 3.19
CDKN2A-201ENST00000304494 PARP3Q9Y6F1 533 aa35■■■■□ 3.19
CDKN2A-201ENST00000304494 GOLGB1Q14789 3259 aaKnown RBP35■■■■□ 3.19
CDKN2A-201ENST00000304494 COL15A1P39059 1388 aa35■■■■□ 3.19
CDKN2A-201ENST00000304494 CANXP27824 592 aaKnown RBP34.97■■■■□ 3.19
CDKN2A-201ENST00000304494 KCNQ3O43525 872 aa34.96■■■■□ 3.19
CDKN2A-201ENST00000304494 FKBP8Q14318 412 aa34.96■■■■□ 3.19
CDKN2A-201ENST00000304494 TAF7Q15545 349 aaPredicted RBP34.96■■■■□ 3.19
CDKN2A-201ENST00000304494 PRKRIP1Q9H875 184 aaPredicted RBP34.96■■■■□ 3.19
CDKN2A-201ENST00000304494 GRIN3BO60391 1043 aa34.95■■■■□ 3.19
CDKN2A-201ENST00000304494 USPL1Q5W0Q7 1092 aa34.95■■■■□ 3.19
CDKN2A-201ENST00000304494 NARFQ9UHQ1 456 aa34.95■■■■□ 3.19
CDKN2A-201ENST00000304494 DLG5Q8TDM6 1919 aa34.93■■■■□ 3.18
CDKN2A-201ENST00000304494 A0A087WZG4 1122 aa34.92■■■■□ 3.18
CDKN2A-201ENST00000304494 YBX3P16989 372 aaKnown RBP eCLIP34.92■■■■□ 3.18
CDKN2A-201ENST00000304494 EIF5P55010 431 aaKnown RBP34.92■■■■□ 3.18
CDKN2A-201ENST00000304494 PNISRQ8TF01 805 aaKnown RBP34.92■■■■□ 3.18
CDKN2A-201ENST00000304494 C10orf71Q711Q0 1435 aa34.91■■■■□ 3.18
CDKN2A-201ENST00000304494 SNRPA1P09661 255 aaKnown RBP34.9■■■■□ 3.18
CDKN2A-201ENST00000304494 TGFB2P61812 414 aa34.9■■■■□ 3.18
CDKN2A-201ENST00000304494 WDR43Q15061 677 aaKnown RBP eCLIP34.9■■■■□ 3.18
CDKN2A-201ENST00000304494 KIF13BQ9NQT8 1826 aa34.9■■■■□ 3.18
CDKN2A-201ENST00000304494 IL6STP40189 918 aaPredicted RBP34.89■■■■□ 3.18
CDKN2A-201ENST00000304494 NPM2Q86SE8 214 aaKnown RBP34.88■■■■□ 3.17
CDKN2A-201ENST00000304494 CHD4Q14839 1912 aa34.88■■■■□ 3.17
CDKN2A-201ENST00000304494 TM4SF1P30408 202 aa34.87■■■■□ 3.17
CDKN2A-201ENST00000304494 A1BGP04217 495 aa34.86■■■■□ 3.17
CDKN2A-201ENST00000304494 DDR1Q08345 913 aa34.86■■■■□ 3.17
CDKN2A-201ENST00000304494 PXDNLA1KZ92 1463 aa34.85■■■■□ 3.17
CDKN2A-201ENST00000304494 ZNF330Q9Y3S2 320 aaPredicted RBP34.85■■■■□ 3.17
CDKN2A-201ENST00000304494 USP16Q9Y5T5 823 aa34.85■■■■□ 3.17
CDKN2A-201ENST00000304494 POLRMTO00411 1230 aaKnown RBP34.84■■■■□ 3.17
CDKN2A-201ENST00000304494 RIPK4P57078 832 aa34.84■■■■□ 3.17
CDKN2A-201ENST00000304494 MIS18AQ9NYP9 233 aa34.84■■■■□ 3.17
CDKN2A-201ENST00000304494 LMOD3Q0VAK6 560 aa34.83■■■■□ 3.17
CDKN2A-201ENST00000304494 THUMPD2Q9BTF0 503 aaKnown RBP34.82■■■■□ 3.16
CDKN2A-201ENST00000304494 BCL2L12Q9HB09 334 aa34.82■■■■□ 3.16
CDKN2A-201ENST00000304494 PRAMEF22A3QJZ6 481 aa34.81■■■■□ 3.16
CDKN2A-201ENST00000304494 TMPOP42166 694 aaKnown RBP34.81■■■■□ 3.16
CDKN2A-201ENST00000304494 NFIXQ14938 502 aa34.8■■■■□ 3.16
CDKN2A-201ENST00000304494 KDM3BQ7LBC6 1761 aa34.79■■■■□ 3.16
CDKN2A-201ENST00000304494 ZNF316A6NFI3 1004 aaPredicted RBP34.79■■■■□ 3.16
CDKN2A-201ENST00000304494 CCDC146Q8IYE0 955 aa34.79■■■■□ 3.16
CDKN2A-201ENST00000304494 RUNDC1Q96C34 613 aa34.79■■■■□ 3.16
CDKN2A-201ENST00000304494 KIAA1551Q9HCM1 1747 aa34.78■■■■□ 3.16
CDKN2A-201ENST00000304494 A0A0G2JLW4 131 aa34.78■■■■□ 3.16
CDKN2A-201ENST00000304494 WWC3Q9ULE0 1092 aa34.78■■■■□ 3.16
CDKN2A-201ENST00000304494 TBC1D2BQ9UPU7 963 aa34.78■■■■□ 3.16
CDKN2A-201ENST00000304494 ADAMTS8Q9UP79 889 aa34.77■■■■□ 3.16
CDKN2A-201ENST00000304494 SCN7AQ01118 1682 aa34.76■■■■□ 3.16
CDKN2A-201ENST00000304494 N4BP2Q86UW6 1770 aaPredicted RBP34.75■■■■□ 3.15
CDKN2A-201ENST00000304494 DPEP1P16444 411 aa34.75■■■■□ 3.15
CDKN2A-201ENST00000304494 EIF4A1P60842 406 aaKnown RBP34.74■■■■□ 3.15
CDKN2A-201ENST00000304494 DZIP3Q86Y13 1208 aaKnown RBP34.74■■■■□ 3.15
CDKN2A-201ENST00000304494 SERPINB2P05120 415 aa34.73■■■■□ 3.15
CDKN2A-201ENST00000304494 ZNF784Q8NCA9 323 aaPredicted RBP34.73■■■■□ 3.15
CDKN2A-201ENST00000304494 GIGYF1O75420 1035 aaPredicted RBP34.72■■■■□ 3.15
CDKN2A-201ENST00000304494 PIP4K2AP48426 406 aaPredicted RBP34.72■■■■□ 3.15
CDKN2A-201ENST00000304494 BABAM1Q9NWV8 329 aa34.72■■■■□ 3.15
CDKN2A-201ENST00000304494 TSPYL4Q9UJ04 414 aa34.72■■■■□ 3.15
CDKN2A-201ENST00000304494 RRP7AQ9Y3A4 280 aaKnown RBP34.72■■■■□ 3.15
CDKN2A-201ENST00000304494 LAMB4A4D0S4 1761 aa34.72■■■■□ 3.15
CDKN2A-201ENST00000304494 CAMTA2O94983 1202 aa34.71■■■■□ 3.15
CDKN2A-201ENST00000304494 BICDL1Q6ZP65 573 aa34.71■■■■□ 3.15
CDKN2A-201ENST00000304494 NRXN2Q9P2S2 1712 aa34.71■■■■□ 3.15
CDKN2A-201ENST00000304494 NEUROD2Q15784 382 aa34.7■■■■□ 3.15
CDKN2A-201ENST00000304494 TBC1D9BQ66K14 1250 aa34.7■■■■□ 3.15
CDKN2A-201ENST00000304494 BCS1LQ9Y276 419 aa34.7■■■■□ 3.15
CDKN2A-201ENST00000304494 NBPF26B4DH59 902 aa34.68■■■■□ 3.14
CDKN2A-201ENST00000304494 NBPF10Q6P3W6 841 aaKnown RBP34.68■■■■□ 3.14
CDKN2A-201ENST00000304494 NBPF15Q8N660 670 aa34.68■■■■□ 3.14
CDKN2A-201ENST00000304494 PIM2Q9P1W9 311 aa34.68■■■■□ 3.14
CDKN2A-201ENST00000304494 AFDNP55196 1824 aaKnown RBP34.67■■■■□ 3.14
CDKN2A-201ENST00000304494 CARMIL3Q8ND23 1372 aa34.67■■■■□ 3.14
CDKN2A-201ENST00000304494 KCNA3P22001 575 aa34.67■■■■□ 3.14
CDKN2A-201ENST00000304494 BCORQ6W2J9 1755 aa34.67■■■■□ 3.14
CDKN2A-201ENST00000304494 CLEC4GQ6UXB4 293 aa34.66■■■■□ 3.14
CDKN2A-201ENST00000304494 ZNF652Q9Y2D9 606 aa34.66■■■■□ 3.14
CDKN2A-201ENST00000304494 SETDB2Q96T68 719 aa34.65■■■■□ 3.14
CDKN2A-201ENST00000304494 RGL2O15211 777 aa34.64■■■■□ 3.14
CDKN2A-201ENST00000304494 BRCA1P38398 1863 aaKnown RBP34.64■■■■□ 3.14
CDKN2A-201ENST00000304494 TRIM35Q9UPQ4 493 aa34.63■■■■□ 3.13
CDKN2A-201ENST00000304494 CHRNA5P30532 468 aa34.62■■■■□ 3.13
CDKN2A-201ENST00000304494 DALRD3Q5D0E6 543 aaKnown RBP34.62■■■■□ 3.13
CDKN2A-201ENST00000304494 ERBB4Q15303 1308 aa34.58■■■■□ 3.13
CDKN2A-201ENST00000304494 ANP32CO43423 234 aa34.58■■■■□ 3.13
CDKN2A-201ENST00000304494 NPHP1O15259 732 aa34.57■■■■□ 3.12
CDKN2A-201ENST00000304494 PRR5LQ6MZQ0 368 aa34.57■■■■□ 3.12
CDKN2A-201ENST00000304494 CHL1O00533 1208 aa34.56■■■■□ 3.12
CDKN2A-201ENST00000304494 ARHGAP27Q6ZUM4 889 aa34.56■■■■□ 3.12
CDKN2A-201ENST00000304494 CNBD1Q8NA66 436 aa34.56■■■■□ 3.12
CDKN2A-201ENST00000304494 BRIP1Q9BX63 1249 aa34.56■■■■□ 3.12
CDKN2A-201ENST00000304494 PDZRN3Q9UPQ7 1066 aa34.56■■■■□ 3.12
CDKN2A-201ENST00000304494 H0YIN7 160 aa34.55■■■■□ 3.12
CDKN2A-201ENST00000304494 C2CD5Q86YS7 1000 aa34.55■■■■□ 3.12
CDKN2A-201ENST00000304494 LAS1LQ9Y4W2 734 aaKnown RBP34.55■■■■□ 3.12
CDKN2A-201ENST00000304494 ARFGEF1Q9Y6D6 1849 aa34.55■■■■□ 3.12
CDKN2A-201ENST00000304494 MYL6BP14649 208 aa34.54■■■■□ 3.12
CDKN2A-201ENST00000304494 PDE6BP35913 854 aa34.54■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms