RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 NRAPQ86VF7 1730 aa8.8□□□□□ -1
DEPDC4-201ENST00000299185 SENP3-EIF4A1A0A087X0R7 540 aa8.8□□□□□ -1
DEPDC4-201ENST00000299185 NBPF26B4DH59 902 aa8.8□□□□□ -1
DEPDC4-201ENST00000299185 GCP02774 474 aa8.8□□□□□ -1
DEPDC4-201ENST00000299185 ZNF516Q92618 1163 aa8.8□□□□□ -1
DEPDC4-201ENST00000299185 LRRC59Q96AG4 307 aaKnown RBP8.8□□□□□ -1
DEPDC4-201ENST00000299185 ZNF775Q96BV0 537 aaPredicted RBP8.8□□□□□ -1
DEPDC4-201ENST00000299185 LTV1Q96GA3 475 aaPredicted RBP8.8□□□□□ -1
DEPDC4-201ENST00000299185 TMUB1Q9BVT8 246 aa8.8□□□□□ -1
DEPDC4-201ENST00000299185 CAMTA1Q9Y6Y1 1673 aa8.79□□□□□ -1
DEPDC4-201ENST00000299185 ANP32CO43423 234 aa8.79□□□□□ -1
DEPDC4-201ENST00000299185 PRDM11Q9NQV5 511 aa8.79□□□□□ -1
DEPDC4-201ENST00000299185 POLKQ9UBT6 870 aa8.79□□□□□ -1
DEPDC4-201ENST00000299185 FAM198AQ9UFP1 575 aa8.79□□□□□ -1
DEPDC4-201ENST00000299185 MYBBP1AQ9BQG0 1328 aaKnown RBP8.79□□□□□ -1
DEPDC4-201ENST00000299185 RGPD2P0DJD1 1756 aa8.78□□□□□ -1
DEPDC4-201ENST00000299185 AATKQ6ZMQ8 1374 aa8.78□□□□□ -1
DEPDC4-201ENST00000299185 MTHFSP49914 203 aa8.78□□□□□ -1
DEPDC4-201ENST00000299185 USHBP1Q8N6Y0 703 aa8.78□□□□□ -1
DEPDC4-201ENST00000299185 TATDN2Q93075 761 aa8.78□□□□□ -1
DEPDC4-201ENST00000299185 COL14A1Q05707 1796 aaKnown RBP8.78□□□□□ -1
DEPDC4-201ENST00000299185 MAP2P11137 1827 aaKnown RBP8.77□□□□□ -1
DEPDC4-201ENST00000299185 CPDO75976 1380 aa8.77□□□□□ -1.01
DEPDC4-201ENST00000299185 SPDYE16A6NNV3 312 aaPredicted RBP8.77□□□□□ -1.01
DEPDC4-201ENST00000299185 C3orf80F5H4A9 247 aa8.77□□□□□ -1.01
DEPDC4-201ENST00000299185 HOXC9P31274 260 aa8.77□□□□□ -1.01
DEPDC4-201ENST00000299185 AMPHP49418 695 aa8.77□□□□□ -1.01
DEPDC4-201ENST00000299185 HSP90AB2PQ58FF8 381 aa8.77□□□□□ -1.01
DEPDC4-201ENST00000299185 ARHGEF25Q86VW2 580 aa8.77□□□□□ -1.01
DEPDC4-201ENST00000299185 C8orf37Q96NL8 207 aa8.77□□□□□ -1.01
DEPDC4-201ENST00000299185 COL5A2P05997 1499 aaPredicted RBP8.77□□□□□ -1.01
DEPDC4-201ENST00000299185 RTL1A6NKG5 1358 aa8.76□□□□□ -1.01
DEPDC4-201ENST00000299185 FLT4P35916 1363 aa8.76□□□□□ -1.01
DEPDC4-201ENST00000299185 FAM208AQ9UK61 1670 aaKnown RBP8.76□□□□□ -1.01
DEPDC4-201ENST00000299185 FAM83GA6ND36 823 aa8.76□□□□□ -1.01
DEPDC4-201ENST00000299185 PDIA6Q15084 440 aa8.76□□□□□ -1.01
DEPDC4-201ENST00000299185 RALBP1Q15311 655 aa8.76□□□□□ -1.01
DEPDC4-201ENST00000299185 MEX3CQ5U5Q3 659 aaKnown RBP8.76□□□□□ -1.01
DEPDC4-201ENST00000299185 STRN4Q9NRL3 753 aa8.76□□□□□ -1.01
DEPDC4-201ENST00000299185 PNMA3Q9UL41 463 aa8.76□□□□□ -1.01
DEPDC4-201ENST00000299185 RGPD1P0DJD0 1748 aa8.75□□□□□ -1.01
DEPDC4-201ENST00000299185 EIF4A2Q14240 407 aaKnown RBP8.75□□□□□ -1.01
DEPDC4-201ENST00000299185 AEBP1Q8IUX7 1158 aa8.75□□□□□ -1.01
DEPDC4-201ENST00000299185 NKX2-3Q8TAU0 364 aa8.75□□□□□ -1.01
DEPDC4-201ENST00000299185 BBXQ8WY36 941 aaPredicted RBP8.75□□□□□ -1.01
DEPDC4-201ENST00000299185 MRS2Q9HD23 443 aa8.75□□□□□ -1.01
DEPDC4-201ENST00000299185 SPATA31A6Q5VVP1 1343 aa8.75□□□□□ -1.01
DEPDC4-201ENST00000299185 SLIT2O94813 1529 aa8.75□□□□□ -1.01
DEPDC4-201ENST00000299185 RNF40O75150 1001 aa8.74□□□□□ -1.01
DEPDC4-201ENST00000299185 APLP1P51693 650 aa8.74□□□□□ -1.01
DEPDC4-201ENST00000299185 KCNH5Q8NCM2 988 aa8.74□□□□□ -1.01
DEPDC4-201ENST00000299185 ANKRD24Q8TF21 1146 aa8.74□□□□□ -1.01
DEPDC4-201ENST00000299185 AFF2P51816 1311 aa8.74□□□□□ -1.01
DEPDC4-201ENST00000299185 ABCC6O95255 1503 aa8.74□□□□□ -1.01
DEPDC4-201ENST00000299185 SLC4A3P48751 1232 aa8.73□□□□□ -1.01
DEPDC4-201ENST00000299185 LARP1Q6PKG0 1096 aaKnown RBP8.73□□□□□ -1.01
DEPDC4-201ENST00000299185 IP6K1Q92551 441 aa8.73□□□□□ -1.01
DEPDC4-201ENST00000299185 BTG4Q9NY30 223 aa8.73□□□□□ -1.01
DEPDC4-201ENST00000299185 MEGF6O75095 1541 aa8.73□□□□□ -1.01
DEPDC4-201ENST00000299185 INSRP06213 1382 aa8.73□□□□□ -1.01
DEPDC4-201ENST00000299185 BLMP54132 1417 aaPredicted RBP8.72□□□□□ -1.01
DEPDC4-201ENST00000299185 BCL9LQ86UU0 1499 aa8.72□□□□□ -1.01
DEPDC4-201ENST00000299185 NWD2Q9ULI1 1742 aa8.72□□□□□ -1.01
DEPDC4-201ENST00000299185 U2SURPO15042 1029 aaKnown RBP8.72□□□□□ -1.01
DEPDC4-201ENST00000299185 HMOX1P09601 288 aa8.72□□□□□ -1.01
DEPDC4-201ENST00000299185 CSB-PGBD3P0DP91 1061 aa8.72□□□□□ -1.01
DEPDC4-201ENST00000299185 PRIM1P49642 420 aaKnown RBP8.72□□□□□ -1.01
DEPDC4-201ENST00000299185 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.72□□□□□ -1.01
DEPDC4-201ENST00000299185 RBM27Q9P2N5 1060 aaKnown RBP8.72□□□□□ -1.01
DEPDC4-201ENST00000299185 WNK3Q9BYP7 1800 aa8.72□□□□□ -1.01
DEPDC4-201ENST00000299185 GLI3P10071 1580 aa8.72□□□□□ -1.01
DEPDC4-201ENST00000299185 DGAT1O75907 488 aa8.71□□□□□ -1.02
DEPDC4-201ENST00000299185 IL13P35225 146 aa8.71□□□□□ -1.02
DEPDC4-201ENST00000299185 PKDCCQ504Y2 493 aa8.71□□□□□ -1.02
DEPDC4-201ENST00000299185 SLF2Q8IX21 1173 aa8.71□□□□□ -1.02
DEPDC4-201ENST00000299185 CCDC146Q8IYE0 955 aa8.71□□□□□ -1.02
DEPDC4-201ENST00000299185 NGLY1Q96IV0 654 aa8.71□□□□□ -1.02
DEPDC4-201ENST00000299185 NLRP2Q9NX02 1062 aa8.71□□□□□ -1.02
DEPDC4-201ENST00000299185 USP35Q9P2H5 1018 aa8.71□□□□□ -1.02
DEPDC4-201ENST00000299185 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.71□□□□□ -1.02
DEPDC4-201ENST00000299185 DIAPH1O60610 1272 aaKnown RBP8.7□□□□□ -1.02
DEPDC4-201ENST00000299185 NBPF6Q5VWK0 638 aa8.7□□□□□ -1.02
DEPDC4-201ENST00000299185 NUDT18Q6ZVK8 323 aa8.7□□□□□ -1.02
DEPDC4-201ENST00000299185 NBPF4Q96M43 638 aa8.7□□□□□ -1.02
DEPDC4-201ENST00000299185 EYA1Q99502 592 aa8.7□□□□□ -1.02
DEPDC4-201ENST00000299185 PRR14Q9BWN1 585 aa8.7□□□□□ -1.02
DEPDC4-201ENST00000299185 ATRNO75882 1429 aa8.7□□□□□ -1.02
DEPDC4-201ENST00000299185 LRRC37A3O60309 1634 aa8.69□□□□□ -1.02
DEPDC4-201ENST00000299185 SLC19A1P41440 591 aa8.69□□□□□ -1.02
DEPDC4-201ENST00000299185 COPS2P61201 443 aa8.69□□□□□ -1.02
DEPDC4-201ENST00000299185 FAM9BQ8IZU0 186 aa8.69□□□□□ -1.02
DEPDC4-201ENST00000299185 CFAP53Q96M91 514 aa8.69□□□□□ -1.02
DEPDC4-201ENST00000299185 USP21Q9UK80 565 aa8.69□□□□□ -1.02
DEPDC4-201ENST00000299185 CCDC9Q9Y3X0 531 aaKnown RBP8.69□□□□□ -1.02
DEPDC4-201ENST00000299185 WDR17Q8IZU2 1322 aa8.69□□□□□ -1.02
DEPDC4-201ENST00000299185 IGSF1Q8N6C5 1336 aa8.69□□□□□ -1.02
DEPDC4-201ENST00000299185 CRB1P82279 1406 aa8.69□□□□□ -1.02
DEPDC4-201ENST00000299185 NCAPD2Q15021 1401 aa8.69□□□□□ -1.02
DEPDC4-201ENST00000299185 ZPR1O75312 459 aa8.68□□□□□ -1.02
DEPDC4-201ENST00000299185 U2AF1L5P0DN76 240 aaPredicted RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms