RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ZBTB9Q96C00 473 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 FAM135BQ49AJ0 1406 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 LIG1P18858 919 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 GABPB1Q06547 395 aaPredicted RBP16.12■□□□□ 0.17
SKA3-201ENST00000298260 CCDC144BQ3MJ40 725 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 G2E3Q7L622 706 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 CCDC144CPQ8IYA2 1237 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 TRIM5Q9C035 493 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 IL1RAPL2Q9NP60 686 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 SMTNL1A8MU46 457 aa16.11■□□□□ 0.17
SKA3-201ENST00000298260 RGS12O14924 1447 aa16.11■□□□□ 0.17
SKA3-201ENST00000298260 AK2P54819 239 aa16.11■□□□□ 0.17
SKA3-201ENST00000298260 CCDC83Q8IWF9 413 aa16.11■□□□□ 0.17
SKA3-201ENST00000298260 CACTINQ8WUQ7 758 aaKnown RBP16.11■□□□□ 0.17
SKA3-201ENST00000298260 RUFY3Q7L099 469 aa16.11■□□□□ 0.17
SKA3-201ENST00000298260 MCM10Q7L590 875 aa16.11■□□□□ 0.17
SKA3-201ENST00000298260 TMEM87AQ8NBN3 555 aa16.11■□□□□ 0.17
SKA3-201ENST00000298260 MORC2Q9Y6X9 1032 aaPredicted RBP16.11■□□□□ 0.17
SKA3-201ENST00000298260 REREQ9P2R6 1566 aa16.11■□□□□ 0.17
SKA3-201ENST00000298260 GOLGA6L6A8MZA4 724 aa16.1■□□□□ 0.17
SKA3-201ENST00000298260 ELF2Q15723 593 aa16.1■□□□□ 0.17
SKA3-201ENST00000298260 TAF3Q5VWG9 929 aa16.1■□□□□ 0.17
SKA3-201ENST00000298260 ZSCAN25Q6NSZ9 544 aa16.1■□□□□ 0.17
SKA3-201ENST00000298260 TRMT1Q9NXH9 659 aaKnown RBP16.1■□□□□ 0.17
SKA3-201ENST00000298260 MRVI1Q9Y6F6 885 aa16.1■□□□□ 0.17
SKA3-201ENST00000298260 NRXN1Q9ULB1 1477 aa16.1■□□□□ 0.17
SKA3-201ENST00000298260 SLC4A2P04920 1241 aa16.1■□□□□ 0.17
SKA3-201ENST00000298260 FBXO38Q6PIJ6 1188 aa16.1■□□□□ 0.17
SKA3-201ENST00000298260 CAMSAP1Q5T5Y3 1602 aa16.09■□□□□ 0.17
SKA3-201ENST00000298260 PNMA6EA0A0J9YXQ4 647 aa16.09■□□□□ 0.17
SKA3-201ENST00000298260 RBM6P78332 1123 aaKnown RBP16.09■□□□□ 0.17
SKA3-201ENST00000298260 ANO6Q4KMQ2 910 aa16.09■□□□□ 0.17
SKA3-201ENST00000298260 AEBP2Q6ZN18 517 aaPredicted RBP16.09■□□□□ 0.17
SKA3-201ENST00000298260 A0A087WWV3 80 aa16.09■□□□□ 0.17
SKA3-201ENST00000298260 CCDC192P0DO97 292 aa16.09■□□□□ 0.17
SKA3-201ENST00000298260 PDIA4P13667 645 aaKnown RBP16.09■□□□□ 0.17
SKA3-201ENST00000298260 RRS1Q15050 365 aaKnown RBP16.09■□□□□ 0.17
SKA3-201ENST00000298260 NUTM1Q86Y26 1132 aa16.09■□□□□ 0.17
SKA3-201ENST00000298260 SMC3Q9UQE7 1217 aa16.09■□□□□ 0.17
SKA3-201ENST00000298260 KRT222Q8N1A0 295 aa16.09■□□□□ 0.17
SKA3-201ENST00000298260 GTF3C6Q969F1 213 aa16.09■□□□□ 0.17
SKA3-201ENST00000298260 CBX8Q9HC52 389 aa16.09■□□□□ 0.17
SKA3-201ENST00000298260 TERF2IPQ9NYB0 399 aa16.09■□□□□ 0.17
SKA3-201ENST00000298260 TYRO3Q06418 890 aa16.08■□□□□ 0.16
SKA3-201ENST00000298260 COL9A3Q14050 684 aaPredicted RBP16.08■□□□□ 0.16
SKA3-201ENST00000298260 NECAB1Q8N987 351 aa16.08■□□□□ 0.16
SKA3-201ENST00000298260 PNPLA6Q8IY17 1366 aa16.08■□□□□ 0.16
SKA3-201ENST00000298260 GJB2P29033 226 aa16.08■□□□□ 0.16
SKA3-201ENST00000298260 NECTIN2Q92692 538 aa16.08■□□□□ 0.16
SKA3-201ENST00000298260 ZFP91Q96JP5 570 aaPredicted RBP16.08■□□□□ 0.16
SKA3-201ENST00000298260 PRAM1Q96QH2 718 aa16.08■□□□□ 0.16
SKA3-201ENST00000298260 SPG7Q9UQ90 795 aa16.08■□□□□ 0.16
SKA3-201ENST00000298260 IFT172Q9UG01 1749 aa16.08■□□□□ 0.16
SKA3-201ENST00000298260 CEP135Q66GS9 1140 aa16.07■□□□□ 0.16
SKA3-201ENST00000298260 AEBP1Q8IUX7 1158 aa16.07■□□□□ 0.16
SKA3-201ENST00000298260 FAM200AQ8TCP9 573 aa16.07■□□□□ 0.16
SKA3-201ENST00000298260 TIGD1Q96MW7 591 aa16.07■□□□□ 0.16
SKA3-201ENST00000298260 TFIP11Q9UBB9 837 aaKnown RBP16.07■□□□□ 0.16
SKA3-201ENST00000298260 TTC6Q86TZ1 520 aa16.07■□□□□ 0.16
SKA3-201ENST00000298260 TRIM34Q9BYJ4 488 aa16.07■□□□□ 0.16
SKA3-201ENST00000298260 LRRN4CLQ8ND94 238 aa16.06■□□□□ 0.16
SKA3-201ENST00000298260 OSBPL3Q9H4L5 887 aa16.06■□□□□ 0.16
SKA3-201ENST00000298260 SNX14Q9Y5W7 946 aa16.06■□□□□ 0.16
SKA3-201ENST00000298260 CLTCQ00610 1675 aaKnown RBP16.06■□□□□ 0.16
SKA3-201ENST00000298260 ZNF446Q9NWS9 450 aa16.06■□□□□ 0.16
SKA3-201ENST00000298260 LRRCC1Q9C099 1032 aa16.05■□□□□ 0.16
SKA3-201ENST00000298260 DNAJC25Q9H1X3 360 aa16.05■□□□□ 0.16
SKA3-201ENST00000298260 MTMR6Q9Y217 621 aa16.05■□□□□ 0.16
SKA3-201ENST00000298260 ANAPC15P60006 121 aa16.05■□□□□ 0.16
SKA3-201ENST00000298260 DACT1Q9NYF0 836 aa16.05■□□□□ 0.16
SKA3-201ENST00000298260 CLIP2Q9UDT6 1046 aa16.05■□□□□ 0.16
SKA3-201ENST00000298260 RIMS2Q9UQ26 1411 aa16.05■□□□□ 0.16
SKA3-201ENST00000298260 HMMRO75330 724 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 HSPA4P34932 840 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 ZNF75DP51815 510 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 LMTK2Q8IWU2 1503 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 TPM3P06753 285 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 CASTP20810 708 aaKnown RBP16.04■□□□□ 0.16
SKA3-201ENST00000298260 MAP3K11Q16584 847 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 NUP62CLQ9H1M0 184 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 SALL3Q9BXA9 1300 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 CD163L1Q9NR16 1453 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 IL13P35225 146 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 ADCK5Q3MIX3 580 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 SETBP1Q9Y6X0 1596 aa16.04■□□□□ 0.16
SKA3-201ENST00000298260 CCDC66A2RUB6 948 aa16.03■□□□□ 0.16
SKA3-201ENST00000298260 HDGFL2Q7Z4V5 671 aaPredicted RBP16.03■□□□□ 0.16
SKA3-201ENST00000298260 FBXW7Q969H0 707 aa16.03■□□□□ 0.16
SKA3-201ENST00000298260 TCEANC2Q96MN5 208 aa16.03■□□□□ 0.16
SKA3-201ENST00000298260 TTC14Q96N46 770 aa16.03■□□□□ 0.16
SKA3-201ENST00000298260 MYO5BQ9ULV0 1848 aa16.03■□□□□ 0.16
SKA3-201ENST00000298260 HNRNPH2P55795 449 aaKnown RBP16.03■□□□□ 0.16
SKA3-201ENST00000298260 CWC27Q6UX04 472 aaKnown RBP16.03■□□□□ 0.16
SKA3-201ENST00000298260 NME9Q86XW9 330 aa16.03■□□□□ 0.16
SKA3-201ENST00000298260 ZNF397Q8NF99 534 aaPredicted RBP16.03■□□□□ 0.16
SKA3-201ENST00000298260 FILIP1Q7Z7B0 1213 aa16.02■□□□□ 0.16
SKA3-201ENST00000298260 CDK19Q9BWU1 502 aa16.02■□□□□ 0.16
SKA3-201ENST00000298260 TNMDQ9H2S6 317 aa16.02■□□□□ 0.16
SKA3-201ENST00000298260 LIMCH1Q9UPQ0 1083 aa16.02■□□□□ 0.16
SKA3-201ENST00000298260 ERBB3P21860 1342 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms