RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 KDM3BQ7LBC6 1761 aa21.13■□□□□ 0.97
CPSF4-201ENST00000292476 TNS1Q9HBL0 1735 aaKnown RBP21.13■□□□□ 0.97
CPSF4-201ENST00000292476 SLC4A2P04920 1241 aa21.13■□□□□ 0.97
CPSF4-201ENST00000292476 DEKP35659 375 aaKnown RBP21.13■□□□□ 0.97
CPSF4-201ENST00000292476 ITPRIPQ8IWB1 547 aa21.13■□□□□ 0.97
CPSF4-201ENST00000292476 SCN11AQ9UI33 1791 aa21.13■□□□□ 0.97
CPSF4-201ENST00000292476 NKX1-1Q15270 411 aaPredicted RBP21.12■□□□□ 0.97
CPSF4-201ENST00000292476 KDM6AO15550 1401 aaPredicted RBP21.11■□□□□ 0.97
CPSF4-201ENST00000292476 SBF2Q86WG5 1849 aa21.11■□□□□ 0.97
CPSF4-201ENST00000292476 ABCC4O15439 1325 aa21.11■□□□□ 0.97
CPSF4-201ENST00000292476 MRC1P22897 1456 aa21.11■□□□□ 0.97
CPSF4-201ENST00000292476 ERVV-2B6SEH9 535 aa21.11■□□□□ 0.97
CPSF4-201ENST00000292476 DDX54Q8TDD1 881 aaKnown RBP21.11■□□□□ 0.97
CPSF4-201ENST00000292476 HDGFL1Q5TGJ6 251 aa21.1■□□□□ 0.97
CPSF4-201ENST00000292476 TMEM57Q8N5G2 664 aa21.1■□□□□ 0.97
CPSF4-201ENST00000292476 TNNQ9UQP3 1299 aa21.1■□□□□ 0.97
CPSF4-201ENST00000292476 SIPA1L3O60292 1781 aaPredicted RBP21.09■□□□□ 0.97
CPSF4-201ENST00000292476 CABP4P57796 275 aa21.09■□□□□ 0.97
CPSF4-201ENST00000292476 SHANK3Q9BYB0 1731 aa21.09■□□□□ 0.97
CPSF4-201ENST00000292476 PCDHB15Q9Y5E8 787 aa21.09■□□□□ 0.97
CPSF4-201ENST00000292476 BAG6P46379 1132 aa21.09■□□□□ 0.97
CPSF4-201ENST00000292476 ZNF790Q6PG37 636 aa21.09■□□□□ 0.97
CPSF4-201ENST00000292476 NFATC2IPQ8NCF5 419 aa21.09■□□□□ 0.97
CPSF4-201ENST00000292476 DAXXQ9UER7 740 aaPredicted RBP21.09■□□□□ 0.97
CPSF4-201ENST00000292476 CACNA1FO60840 1977 aa21.08■□□□□ 0.97
CPSF4-201ENST00000292476 TTC5Q8N0Z6 440 aa21.08■□□□□ 0.96
CPSF4-201ENST00000292476 APBA3O96018 575 aa21.07■□□□□ 0.96
CPSF4-201ENST00000292476 EN1Q05925 392 aaPredicted RBP21.07■□□□□ 0.96
CPSF4-201ENST00000292476 PTF1AQ7RTS3 328 aa21.07■□□□□ 0.96
CPSF4-201ENST00000292476 HEG1Q9ULI3 1381 aa21.07■□□□□ 0.96
CPSF4-201ENST00000292476 KAT6BQ8WYB5 2073 aa21.07■□□□□ 0.96
CPSF4-201ENST00000292476 ACSBG1Q96GR2 724 aa21.06■□□□□ 0.96
CPSF4-201ENST00000292476 GIGYF1O75420 1035 aaPredicted RBP21.05■□□□□ 0.96
CPSF4-201ENST00000292476 INTS3Q68E01 1043 aaKnown RBP21.05■□□□□ 0.96
CPSF4-201ENST00000292476 BCL9O00512 1426 aa21.05■□□□□ 0.96
CPSF4-201ENST00000292476 HDAC1Q13547 482 aaPredicted RBP21.05■□□□□ 0.96
CPSF4-201ENST00000292476 ZBTB40Q9NUA8 1239 aa21.04■□□□□ 0.96
CPSF4-201ENST00000292476 DBF4Q9UBU7 674 aaPredicted RBP21.04■□□□□ 0.96
CPSF4-201ENST00000292476 KCNQ3O43525 872 aa21.03■□□□□ 0.96
CPSF4-201ENST00000292476 KCNQ2O43526 872 aa21.03■□□□□ 0.96
CPSF4-201ENST00000292476 CCT4P50991 539 aaKnown RBP21.03■□□□□ 0.96
CPSF4-201ENST00000292476 FLIIQ13045 1269 aa21.03■□□□□ 0.96
CPSF4-201ENST00000292476 FMNL2Q96PY5 1086 aa21.02■□□□□ 0.96
CPSF4-201ENST00000292476 BCL11BQ9C0K0 894 aaPredicted RBP21.02■□□□□ 0.96
CPSF4-201ENST00000292476 ZBTB7BO15156 539 aaPredicted RBP21.02■□□□□ 0.95
CPSF4-201ENST00000292476 EIF2S2P20042 333 aaKnown RBP21.02■□□□□ 0.95
CPSF4-201ENST00000292476 EZH2Q15910 746 aaKnown RBP21.02■□□□□ 0.95
CPSF4-201ENST00000292476 PDZRN3Q9UPQ7 1066 aa21.02■□□□□ 0.95
CPSF4-201ENST00000292476 NHSQ6T4R5 1651 aa21.01■□□□□ 0.95
CPSF4-201ENST00000292476 SNRPA1P09661 255 aaKnown RBP21■□□□□ 0.95
CPSF4-201ENST00000292476 FKBP5Q13451 457 aaPredicted RBP21■□□□□ 0.95
CPSF4-201ENST00000292476 DOT1LQ8TEK3 1739 aa21■□□□□ 0.95
CPSF4-201ENST00000292476 HYPKQ9NX55 129 aa20.99■□□□□ 0.95
CPSF4-201ENST00000292476 NECTIN2Q92692 538 aa20.99■□□□□ 0.95
CPSF4-201ENST00000292476 CAMKK2Q96RR4 588 aa20.99■□□□□ 0.95
CPSF4-201ENST00000292476 SLC39A6Q13433 755 aa20.98■□□□□ 0.95
CPSF4-201ENST00000292476 G2E3Q7L622 706 aa20.98■□□□□ 0.95
CPSF4-201ENST00000292476 SYTL4Q96C24 671 aaPredicted RBP20.98■□□□□ 0.95
CPSF4-201ENST00000292476 UPF2Q9HAU5 1272 aaKnown RBP20.97■□□□□ 0.95
CPSF4-201ENST00000292476 TMOD3Q9NYL9 352 aa20.97■□□□□ 0.95
CPSF4-201ENST00000292476 CHPF2Q9P2E5 772 aa20.97■□□□□ 0.95
CPSF4-201ENST00000292476 PXDNLA1KZ92 1463 aa20.96■□□□□ 0.95
CPSF4-201ENST00000292476 BTAF1O14981 1849 aa20.96■□□□□ 0.95
CPSF4-201ENST00000292476 ZNF496Q96IT1 587 aaPredicted RBP20.96■□□□□ 0.95
CPSF4-201ENST00000292476 BCL11AQ9H165 835 aa20.96■□□□□ 0.95
CPSF4-201ENST00000292476 DDX21Q9NR30 783 aaKnown RBP eCLIP20.96■□□□□ 0.95
CPSF4-201ENST00000292476 PRIM1P49642 420 aaKnown RBP20.95■□□□□ 0.94
CPSF4-201ENST00000292476 BECN1Q14457 450 aa20.95■□□□□ 0.94
CPSF4-201ENST00000292476 SMC5Q8IY18 1101 aa20.95■□□□□ 0.94
CPSF4-201ENST00000292476 DDX58O95786 925 aaKnown RBP20.94■□□□□ 0.94
CPSF4-201ENST00000292476 SLC4A10Q6U841 1118 aa20.94■□□□□ 0.94
CPSF4-201ENST00000292476 RREB1Q92766 1687 aa20.94■□□□□ 0.94
CPSF4-201ENST00000292476 ERBB4Q15303 1308 aa20.93■□□□□ 0.94
CPSF4-201ENST00000292476 RGPD3A6NKT7 1758 aaPredicted RBP20.92■□□□□ 0.94
CPSF4-201ENST00000292476 RGPD4Q7Z3J3 1758 aa20.92■□□□□ 0.94
CPSF4-201ENST00000292476 TOGARAM1Q9Y4F4 1720 aa20.92■□□□□ 0.94
CPSF4-201ENST00000292476 PLSCR1O15162 318 aa20.92■□□□□ 0.94
CPSF4-201ENST00000292476 TBC1D32Q96NH3 1257 aa20.92■□□□□ 0.94
CPSF4-201ENST00000292476 TEX13AQ9BXU3 409 aaPredicted RBP20.92■□□□□ 0.94
CPSF4-201ENST00000292476 NUP188Q5SRE5 1749 aa20.91■□□□□ 0.94
CPSF4-201ENST00000292476 GNAI3P08754 354 aa20.91■□□□□ 0.94
CPSF4-201ENST00000292476 PHAXQ9H814 394 aaKnown RBP20.91■□□□□ 0.94
CPSF4-201ENST00000292476 F6X3S4 739 aa20.89■□□□□ 0.94
CPSF4-201ENST00000292476 NFKBIBQ15653 356 aa20.89■□□□□ 0.94
CPSF4-201ENST00000292476 RPAP2Q8IXW5 612 aaPredicted RBP20.89■□□□□ 0.94
CPSF4-201ENST00000292476 VSIG10Q8N0Z9 540 aa20.89■□□□□ 0.94
CPSF4-201ENST00000292476 KSR2Q6VAB6 950 aa20.89■□□□□ 0.93
CPSF4-201ENST00000292476 DNAAF4Q8WXU2 420 aa20.89■□□□□ 0.93
CPSF4-201ENST00000292476 PAPPAQ13219 1627 aa20.89■□□□□ 0.93
CPSF4-201ENST00000292476 ITGB4P16144 1822 aa20.88■□□□□ 0.93
CPSF4-201ENST00000292476 SEC24BO95487 1268 aa20.88■□□□□ 0.93
CPSF4-201ENST00000292476 PROM2Q8N271 834 aa20.88■□□□□ 0.93
CPSF4-201ENST00000292476 SRCIN1Q9C0H9 1055 aa20.88■□□□□ 0.93
CPSF4-201ENST00000292476 HDAC5Q9UQL6 1122 aa20.88■□□□□ 0.93
CPSF4-201ENST00000292476 PRAMEF22A3QJZ6 481 aa20.87■□□□□ 0.93
CPSF4-201ENST00000292476 PSDA5PKW4 1024 aaPredicted RBP20.87■□□□□ 0.93
CPSF4-201ENST00000292476 TXNRD1Q16881 649 aa20.87■□□□□ 0.93
CPSF4-201ENST00000292476 GCC1Q96CN9 775 aa20.87■□□□□ 0.93
CPSF4-201ENST00000292476 UBR2Q8IWV8 1755 aa20.87■□□□□ 0.93
CPSF4-201ENST00000292476 ATP10DQ9P241 1426 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms