RNA–Protein interactions for RNA: ENST00000289547.8

NPC1L1-201, Transcript of NPC1 like intracellular cholesterol transporter 1, humanhuman

TSL 1 (best) BASIC

Gene NPC1L1, Length 5,048 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1-201ENST00000289547 CCDC158Q5M9N0 1113 aa13.52□□□□□ -0.24
NPC1L1-201ENST00000289547 APBA3O96018 575 aa13.52□□□□□ -0.25
NPC1L1-201ENST00000289547 CHMP4CQ96CF2 233 aa13.52□□□□□ -0.25
NPC1L1-201ENST00000289547 JCADQ9P266 1359 aa13.52□□□□□ -0.25
NPC1L1-201ENST00000289547 XRCC6P12956 609 aaKnown RBP eCLIP13.52□□□□□ -0.25
NPC1L1-201ENST00000289547 CCDC27Q2M243 656 aa13.52□□□□□ -0.25
NPC1L1-201ENST00000289547 THUMPD2Q9BTF0 503 aaKnown RBP13.52□□□□□ -0.25
NPC1L1-201ENST00000289547 NEK4P51957 841 aa13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 CCNL1Q9UK58 526 aaPredicted RBP13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 CEP170BQ9Y4F5 1589 aaPredicted RBP13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 UNC5CLQ8IV45 518 aa13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 NOB1Q9ULX3 412 aaKnown RBP13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 SPHKAPQ2M3C7 1700 aa13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 SURF6O75683 361 aaKnown RBP13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 LETM1O95202 739 aaPredicted RBP13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 PARP3Q9Y6F1 533 aa13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 MAP3K5Q99683 1374 aa13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 AEBP1Q8IUX7 1158 aa13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 PANK2Q9BZ23 570 aa13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 ACBD3Q9H3P7 528 aa13.51□□□□□ -0.25
NPC1L1-201ENST00000289547 H0YHG0 523 aa13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 PES1O00541 588 aaKnown RBP13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 CCDC70Q6NSX1 233 aa13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 CWC22Q9HCG8 908 aaKnown RBP13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 POLR3AO14802 1390 aaPredicted RBP13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 LEKR1Q6ZMV7 388 aa13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 SETDB2Q96T68 719 aa13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 NKTRP30414 1462 aaKnown RBP13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 ZKSCAN1P17029 563 aaPredicted RBP13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 NBPF6Q5VWK0 638 aa13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 NBPF5PQ86XG9 351 aaPredicted RBP13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 NBPF4Q96M43 638 aa13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 MYD88Q99836 296 aa13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 ATP7BP35670 1465 aa13.5□□□□□ -0.25
NPC1L1-201ENST00000289547 FAM196AQ6ZSG2 479 aa13.49□□□□□ -0.25
NPC1L1-201ENST00000289547 TBC1D2Q9BYX2 928 aa13.49□□□□□ -0.25
NPC1L1-201ENST00000289547 FIBPO43427 364 aa13.49□□□□□ -0.25
NPC1L1-201ENST00000289547 TPM1P09493 284 aa13.49□□□□□ -0.25
NPC1L1-201ENST00000289547 CARD14Q9BXL6 1004 aa13.49□□□□□ -0.25
NPC1L1-201ENST00000289547 IL16Q14005 1332 aa13.49□□□□□ -0.25
NPC1L1-201ENST00000289547 TTC39AQ5SRH9 613 aa13.49□□□□□ -0.25
NPC1L1-201ENST00000289547 CLTCL1P53675 1640 aa13.49□□□□□ -0.25
NPC1L1-201ENST00000289547 TSR1Q2NL82 804 aaKnown RBP13.49□□□□□ -0.25
NPC1L1-201ENST00000289547 ALDH1L2Q3SY69 923 aa13.49□□□□□ -0.25
NPC1L1-201ENST00000289547 SPATA31A6Q5VVP1 1343 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 TRAPPC3LQ5T215 181 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 NYXQ9GZU5 481 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 CEP126Q9P2H0 1117 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 FER1L4A9Z1Z3 1794 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 SPATA31A3Q5VYP0 1347 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 DDX46Q7L014 1031 aaKnown RBP13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 TRERF1Q96PN7 1200 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 KIAA0232Q92628 1395 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 NPC1L1Q9UHC9 1359 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 SYCE3A1L190 88 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 SYNE3Q6ZMZ3 975 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 CCDC73Q6ZRK6 1079 aa13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 THRAP3Q9Y2W1 955 aaKnown RBP13.48□□□□□ -0.25
NPC1L1-201ENST00000289547 MTHFSDQ2M296 383 aaKnown RBP13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 NFATC2IPQ8NCF5 419 aa13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 MADDQ8WXG6 1647 aa13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 RNMTO43148 476 aaKnown RBP13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 C20orf194Q5TEA3 1177 aa13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 ZNF622Q969S3 477 aaKnown RBP eCLIP13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 ZBTB3Q9H5J0 574 aa13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 CALRP27797 417 aaKnown RBP13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 ATF7IPQ6VMQ6 1270 aa13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 FLAD1Q8NFF5 587 aa13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 CARD10Q9BWT7 1032 aa13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 ALKQ9UM73 1620 aa13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 DYNC1I1O14576 645 aa13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 KRT27Q7Z3Y8 459 aa13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 CDC5LQ99459 802 aaKnown RBP13.47□□□□□ -0.25
NPC1L1-201ENST00000289547 TRDNQ13061 729 aa13.46□□□□□ -0.25
NPC1L1-201ENST00000289547 SKIDA1Q1XH10 827 aa13.46□□□□□ -0.25
NPC1L1-201ENST00000289547 DNAAF4Q8WXU2 420 aa13.46□□□□□ -0.25
NPC1L1-201ENST00000289547 WASHC4Q2M389 1173 aa13.46□□□□□ -0.25
NPC1L1-201ENST00000289547 ANKIB1Q9P2G1 1089 aa13.46□□□□□ -0.25
NPC1L1-201ENST00000289547 KDM5AP29375 1690 aaKnown RBP13.46□□□□□ -0.25
NPC1L1-201ENST00000289547 USP6P35125 1406 aa13.46□□□□□ -0.26
NPC1L1-201ENST00000289547 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.46□□□□□ -0.26
NPC1L1-201ENST00000289547 RTL1A6NKG5 1358 aa13.46□□□□□ -0.26
NPC1L1-201ENST00000289547 RDXP35241 583 aaKnown RBP13.46□□□□□ -0.26
NPC1L1-201ENST00000289547 PPP4R3BQ5MIZ7 849 aa13.46□□□□□ -0.26
NPC1L1-201ENST00000289547 CWC25Q9NXE8 425 aaPredicted RBP13.46□□□□□ -0.26
NPC1L1-201ENST00000289547 TMOD2Q9NZR1 351 aa13.45□□□□□ -0.26
NPC1L1-201ENST00000289547 PPRC1Q5VV67 1664 aaKnown RBP13.45□□□□□ -0.26
NPC1L1-201ENST00000289547 GNPATO15228 680 aa13.45□□□□□ -0.26
NPC1L1-201ENST00000289547 IFIT5Q13325 482 aaKnown RBP13.45□□□□□ -0.26
NPC1L1-201ENST00000289547 RASSF8Q8NHQ8 419 aa13.45□□□□□ -0.26
NPC1L1-201ENST00000289547 AFF2P51816 1311 aa13.45□□□□□ -0.26
NPC1L1-201ENST00000289547 SPDYE4A6NLX3 237 aa13.45□□□□□ -0.26
NPC1L1-201ENST00000289547 RAD21O60216 631 aa13.45□□□□□ -0.26
NPC1L1-201ENST00000289547 RBM5P52756 815 aaKnown RBP eCLIP13.45□□□□□ -0.26
NPC1L1-201ENST00000289547 SLFN5Q08AF3 891 aa13.45□□□□□ -0.26
NPC1L1-201ENST00000289547 AKAP2Q9Y2D5 859 aa13.45□□□□□ -0.26
NPC1L1-201ENST00000289547 PTCH1Q13635 1447 aa13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 ANKRD18BA2A2Z9 1011 aa13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 GPTP24298 496 aa13.44□□□□□ -0.26
NPC1L1-201ENST00000289547 SLC39A6Q13433 755 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms