RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 USP42Q9H9J4 1324 aaKnown RBP30.36■■■□□ 2.45
LSM4-201ENST00000252816 CD2APQ9Y5K6 639 aa30.35■■■□□ 2.45
LSM4-201ENST00000252816 WDR43Q15061 677 aaKnown RBP eCLIP30.34■■■□□ 2.45
LSM4-201ENST00000252816 CCDC146Q8IYE0 955 aa30.34■■■□□ 2.45
LSM4-201ENST00000252816 TEX13AQ9BXU3 409 aaPredicted RBP30.34■■■□□ 2.45
LSM4-201ENST00000252816 MIS18AQ9NYP9 233 aa30.34■■■□□ 2.45
LSM4-201ENST00000252816 ADAMTS8Q9UP79 889 aa30.34■■■□□ 2.45
LSM4-201ENST00000252816 UTRNP46939 3433 aa30.33■■■□□ 2.45
LSM4-201ENST00000252816 CANXP27824 592 aaKnown RBP30.33■■■□□ 2.45
LSM4-201ENST00000252816 COL15A1P39059 1388 aa30.32■■■□□ 2.44
LSM4-201ENST00000252816 FKBP8Q14318 412 aa30.32■■■□□ 2.44
LSM4-201ENST00000252816 GOLGB1Q14789 3259 aaKnown RBP30.31■■■□□ 2.44
LSM4-201ENST00000252816 PRAMEF22A3QJZ6 481 aa30.31■■■□□ 2.44
LSM4-201ENST00000252816 TMPOP42166 694 aaKnown RBP30.31■■■□□ 2.44
LSM4-201ENST00000252816 RIPK4P57078 832 aa30.31■■■□□ 2.44
LSM4-201ENST00000252816 EIF5P55010 431 aaKnown RBP30.29■■■□□ 2.44
LSM4-201ENST00000252816 USP16Q9Y5T5 823 aa30.29■■■□□ 2.44
LSM4-201ENST00000252816 ZPR1O75312 459 aa30.28■■■□□ 2.44
LSM4-201ENST00000252816 A1BGP04217 495 aa30.28■■■□□ 2.44
LSM4-201ENST00000252816 USPL1Q5W0Q7 1092 aa30.28■■■□□ 2.44
LSM4-201ENST00000252816 RUNDC1Q96C34 613 aa30.28■■■□□ 2.44
LSM4-201ENST00000252816 RRP7AQ9Y3A4 280 aaKnown RBP30.28■■■□□ 2.44
LSM4-201ENST00000252816 SNRPA1P09661 255 aaKnown RBP30.27■■■□□ 2.44
LSM4-201ENST00000252816 NARFQ9UHQ1 456 aa30.27■■■□□ 2.44
LSM4-201ENST00000252816 GPR162Q16538 588 aa30.26■■■□□ 2.43
LSM4-201ENST00000252816 CCDC184Q52MB2 194 aa30.25■■■□□ 2.43
LSM4-201ENST00000252816 PNISRQ8TF01 805 aaKnown RBP30.25■■■□□ 2.43
LSM4-201ENST00000252816 KDM3BQ7LBC6 1761 aa30.24■■■□□ 2.43
LSM4-201ENST00000252816 DDR1Q08345 913 aa30.24■■■□□ 2.43
LSM4-201ENST00000252816 PELP1Q8IZL8 1130 aaKnown RBP30.24■■■□□ 2.43
LSM4-201ENST00000252816 BCL2L12Q9HB09 334 aa30.24■■■□□ 2.43
LSM4-201ENST00000252816 PARP3Q9Y6F1 533 aa30.24■■■□□ 2.43
LSM4-201ENST00000252816 NEUROD2Q15784 382 aa30.23■■■□□ 2.43
LSM4-201ENST00000252816 TM4SF1P30408 202 aa30.22■■■□□ 2.43
LSM4-201ENST00000252816 IL6STP40189 918 aaPredicted RBP30.22■■■□□ 2.43
LSM4-201ENST00000252816 YBX3P16989 372 aaKnown RBP eCLIP30.21■■■□□ 2.431e-10■■■□□ 15.9
LSM4-201ENST00000252816 PIP4K2AP48426 406 aaPredicted RBP30.21■■■□□ 2.43
LSM4-201ENST00000252816 LMOD3Q0VAK6 560 aa30.21■■■□□ 2.43
LSM4-201ENST00000252816 ZNF330Q9Y3S2 320 aaPredicted RBP30.21■■■□□ 2.43
LSM4-201ENST00000252816 C10orf71Q711Q0 1435 aa30.21■■■□□ 2.43
LSM4-201ENST00000252816 A0A087WZG4 1122 aa30.2■■■□□ 2.43
LSM4-201ENST00000252816 EIF4A1P60842 406 aaKnown RBP30.2■■■□□ 2.43
LSM4-201ENST00000252816 TRIM35Q9UPQ4 493 aa30.19■■■□□ 2.42
LSM4-201ENST00000252816 POLRMTO00411 1230 aaKnown RBP30.18■■■□□ 2.42
LSM4-201ENST00000252816 NFIXQ14938 502 aa30.18■■■□□ 2.42
LSM4-201ENST00000252816 TBC1D2BQ9UPU7 963 aa30.18■■■□□ 2.42
LSM4-201ENST00000252816 KIF13BQ9NQT8 1826 aa30.17■■■□□ 2.42
LSM4-201ENST00000252816 GIGYF1O75420 1035 aaPredicted RBP30.17■■■□□ 2.42
LSM4-201ENST00000252816 YY1P25490 414 aa30.17■■■□□ 2.42
LSM4-201ENST00000252816 NBPF26B4DH59 902 aa30.16■■■□□ 2.42
LSM4-201ENST00000252816 NBPF10Q6P3W6 841 aaKnown RBP30.16■■■□□ 2.42
LSM4-201ENST00000252816 NBPF15Q8N660 670 aa30.16■■■□□ 2.42
LSM4-201ENST00000252816 TSPYL4Q9UJ04 414 aa30.16■■■□□ 2.42
LSM4-201ENST00000252816 PXDNLA1KZ92 1463 aa30.16■■■□□ 2.42
LSM4-201ENST00000252816 ANP32CO43423 234 aa30.15■■■□□ 2.42
LSM4-201ENST00000252816 WWC3Q9ULE0 1092 aa30.15■■■□□ 2.42
LSM4-201ENST00000252816 KIAA1551Q9HCM1 1747 aa30.13■■■□□ 2.41
LSM4-201ENST00000252816 TGFB2P61812 414 aa30.13■■■□□ 2.41
LSM4-201ENST00000252816 SCN7AQ01118 1682 aa30.12■■■□□ 2.41
LSM4-201ENST00000252816 APAF1O14727 1248 aa30.12■■■□□ 2.41
LSM4-201ENST00000252816 CAMTA2O94983 1202 aa30.12■■■□□ 2.41
LSM4-201ENST00000252816 NPM2Q86SE8 214 aaKnown RBP30.12■■■□□ 2.41
LSM4-201ENST00000252816 BABAM1Q9NWV8 329 aa30.12■■■□□ 2.41
LSM4-201ENST00000252816 LAMB4A4D0S4 1761 aa30.11■■■□□ 2.41
LSM4-201ENST00000252816 A0A0G2JLW4 131 aa30.11■■■□□ 2.41
LSM4-201ENST00000252816 DZIP3Q86Y13 1208 aaKnown RBP30.11■■■□□ 2.41
LSM4-201ENST00000252816 TBC1D9BQ66K14 1250 aa30.1■■■□□ 2.41
LSM4-201ENST00000252816 BICDL1Q6ZP65 573 aa30.1■■■□□ 2.41
LSM4-201ENST00000252816 GRIN3BO60391 1043 aa30.09■■■□□ 2.41
LSM4-201ENST00000252816 DPEP1P16444 411 aa30.09■■■□□ 2.41
LSM4-201ENST00000252816 N4BP2Q86UW6 1770 aaPredicted RBP30.09■■■□□ 2.41
LSM4-201ENST00000252816 SERPINB2P05120 415 aa30.08■■■□□ 2.41
LSM4-201ENST00000252816 CHL1O00533 1208 aa30.07■■■□□ 2.4
LSM4-201ENST00000252816 AFDNP55196 1824 aaKnown RBP30.06■■■□□ 2.4
LSM4-201ENST00000252816 NRXN2Q9P2S2 1712 aa30.06■■■□□ 2.4
LSM4-201ENST00000252816 MRS2Q9HD23 443 aa30.06■■■□□ 2.4
LSM4-201ENST00000252816 CHD4Q14839 1912 aa30.06■■■□□ 2.4
LSM4-201ENST00000252816 KCNA3P22001 575 aa30.05■■■□□ 2.4
LSM4-201ENST00000252816 LAS1LQ9Y4W2 734 aaKnown RBP30.05■■■□□ 2.4
LSM4-201ENST00000252816 BCORQ6W2J9 1755 aa30.05■■■□□ 2.4
LSM4-201ENST00000252816 CHRNA5P30532 468 aa30.01■■■□□ 2.39
LSM4-201ENST00000252816 KRT24Q2M2I5 525 aa30.01■■■□□ 2.39
LSM4-201ENST00000252816 NGEFQ8N5V2 710 aa30.01■■■□□ 2.39
LSM4-201ENST00000252816 CARMIL3Q8ND23 1372 aa30.01■■■□□ 2.39
LSM4-201ENST00000252816 CLEC4GQ6UXB4 293 aa30■■■□□ 2.39
LSM4-201ENST00000252816 SETDB2Q96T68 719 aa30■■■□□ 2.39
LSM4-201ENST00000252816 MYL6BP14649 208 aa29.99■■■□□ 2.39
LSM4-201ENST00000252816 EIF2S2P20042 333 aaKnown RBP29.99■■■□□ 2.39
LSM4-201ENST00000252816 CFAP44Q96MT7 982 aa29.99■■■□□ 2.39
LSM4-201ENST00000252816 BCS1LQ9Y276 419 aa29.99■■■□□ 2.39
LSM4-201ENST00000252816 BRCA1P38398 1863 aaKnown RBP29.98■■■□□ 2.39
LSM4-201ENST00000252816 ERBB4Q15303 1308 aa29.97■■■□□ 2.39
LSM4-201ENST00000252816 SENP3-EIF4A1A0A087X0R7 540 aa29.97■■■□□ 2.39
LSM4-201ENST00000252816 HLFQ16534 295 aa29.97■■■□□ 2.39
LSM4-201ENST00000252816 TTLL7Q6ZT98 887 aa29.97■■■□□ 2.39
LSM4-201ENST00000252816 ZNF652Q9Y2D9 606 aa29.97■■■□□ 2.39
LSM4-201ENST00000252816 ZNF853P0CG23 659 aa29.96■■■□□ 2.39
LSM4-201ENST00000252816 PDIA6Q15084 440 aa29.96■■■□□ 2.39
LSM4-201ENST00000252816 PRR5LQ6MZQ0 368 aa29.96■■■□□ 2.39
LSM4-201ENST00000252816 CCDC24Q8N4L8 307 aa29.96■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 174.5 ms