RNA–Protein interactions for RNA: ENST00000235958.4

HMGCL-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 5

Gene HMGCL, Length 1,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-201ENST00000235958 CHMP4AQ9BY43 222 aa13.11□□□□□ -0.31
HMGCL-201ENST00000235958 MYH14Q7Z406 1995 aaKnown RBP13.11□□□□□ -0.31
HMGCL-201ENST00000235958 TCERG1O14776 1098 aaKnown RBP13.1□□□□□ -0.31
HMGCL-201ENST00000235958 CANXP27824 592 aaKnown RBP13.1□□□□□ -0.31
HMGCL-201ENST00000235958 PIP4K2AP48426 406 aaPredicted RBP13.1□□□□□ -0.31
HMGCL-201ENST00000235958 HDGFL1Q5TGJ6 251 aa13.1□□□□□ -0.31
HMGCL-201ENST00000235958 CCDC30Q5VVM6 783 aa13.1□□□□□ -0.31
HMGCL-201ENST00000235958 CCDC87Q9NVE4 849 aa13.1□□□□□ -0.31
HMGCL-201ENST00000235958 ZNF831Q5JPB2 1677 aa13.09□□□□□ -0.31
HMGCL-201ENST00000235958 TAF1LQ8IZX4 1826 aa13.09□□□□□ -0.31
HMGCL-201ENST00000235958 NBPF26B4DH59 902 aa13.09□□□□□ -0.31
HMGCL-201ENST00000235958 RPS6KA4O75676 772 aa13.09□□□□□ -0.31
HMGCL-201ENST00000235958 PDIA6Q15084 440 aa13.09□□□□□ -0.31
HMGCL-201ENST00000235958 NBPF14Q5TI25 921 aa13.09□□□□□ -0.31
HMGCL-201ENST00000235958 NBPF10Q6P3W6 841 aaKnown RBP13.09□□□□□ -0.31
HMGCL-201ENST00000235958 SMIM5Q71RC9 77 aa13.09□□□□□ -0.31
HMGCL-201ENST00000235958 NBPF15Q8N660 670 aa13.09□□□□□ -0.31
HMGCL-201ENST00000235958 AKT1S1Q96B36 256 aa13.09□□□□□ -0.31
HMGCL-201ENST00000235958 RGPD3A6NKT7 1758 aaPredicted RBP13.08□□□□□ -0.32
HMGCL-201ENST00000235958 RGPD4Q7Z3J3 1758 aa13.08□□□□□ -0.32
HMGCL-201ENST00000235958 ANXA1P04083 346 aa13.08□□□□□ -0.32
HMGCL-201ENST00000235958 CT47B1P0C2W7 299 aaPredicted RBP13.08□□□□□ -0.32
HMGCL-201ENST00000235958 AK7Q96M32 723 aa13.08□□□□□ -0.32
HMGCL-201ENST00000235958 DDX21Q9NR30 783 aaKnown RBP eCLIP13.08□□□□□ -0.32
HMGCL-201ENST00000235958 TFCP2L1Q9NZI6 479 aa13.08□□□□□ -0.32
HMGCL-201ENST00000235958 CHPF2Q9P2E5 772 aa13.08□□□□□ -0.32
HMGCL-201ENST00000235958 DBF4Q9UBU7 674 aaPredicted RBP13.08□□□□□ -0.32
HMGCL-201ENST00000235958 ZBTB1Q9Y2K1 713 aa13.08□□□□□ -0.32
HMGCL-201ENST00000235958 CNTNAP4Q9C0A0 1308 aa13.08□□□□□ -0.32
HMGCL-201ENST00000235958 GNPATO15228 680 aa13.07□□□□□ -0.32
HMGCL-201ENST00000235958 SLC4A2P04920 1241 aa13.07□□□□□ -0.32
HMGCL-201ENST00000235958 MYL6BP14649 208 aa13.07□□□□□ -0.32
HMGCL-201ENST00000235958 EIF5P55010 431 aaKnown RBP13.07□□□□□ -0.32
HMGCL-201ENST00000235958 SLC15A2Q16348 729 aa13.07□□□□□ -0.32
HMGCL-201ENST00000235958 ZNF827Q17R98 1081 aa13.07□□□□□ -0.32
HMGCL-201ENST00000235958 PROSER3Q2NL68 480 aa13.07□□□□□ -0.32
HMGCL-201ENST00000235958 ZNF428Q96B54 188 aa13.07□□□□□ -0.32
HMGCL-201ENST00000235958 RTCBQ9Y3I0 505 aaKnown RBP13.07□□□□□ -0.32
HMGCL-201ENST00000235958 C5P01031 1676 aa13.07□□□□□ -0.32
HMGCL-201ENST00000235958 TJP1Q07157 1748 aa13.07□□□□□ -0.32
HMGCL-201ENST00000235958 IL6STP40189 918 aaPredicted RBP13.06□□□□□ -0.32
HMGCL-201ENST00000235958 TRAPPC3LQ5T215 181 aa13.06□□□□□ -0.32
HMGCL-201ENST00000235958 AMIGO3Q86WK7 504 aa13.06□□□□□ -0.32
HMGCL-201ENST00000235958 SSH1Q8WYL5 1049 aa13.06□□□□□ -0.32
HMGCL-201ENST00000235958 STK31Q9BXU1 1019 aa13.06□□□□□ -0.32
HMGCL-201ENST00000235958 ANO8Q9HCE9 1232 aaPredicted RBP13.06□□□□□ -0.32
HMGCL-201ENST00000235958 STK32BQ9NY57 414 aa13.06□□□□□ -0.32
HMGCL-201ENST00000235958 ERBB4Q15303 1308 aa13.06□□□□□ -0.32
HMGCL-201ENST00000235958 RARSP54136 660 aaKnown RBP13.05□□□□□ -0.32
HMGCL-201ENST00000235958 ALDH1L2Q3SY69 923 aa13.05□□□□□ -0.32
HMGCL-201ENST00000235958 LRP10Q7Z4F1 713 aa13.05□□□□□ -0.32
HMGCL-201ENST00000235958 ARHGEF1Q92888 912 aaKnown RBP13.05□□□□□ -0.32
HMGCL-201ENST00000235958 ARXQ96QS3 562 aa13.05□□□□□ -0.32
HMGCL-201ENST00000235958 HYPKQ9NX55 129 aa13.05□□□□□ -0.32
HMGCL-201ENST00000235958 ZNF330Q9Y3S2 320 aaPredicted RBP13.05□□□□□ -0.32
HMGCL-201ENST00000235958 CACNA1FO60840 1977 aa13.05□□□□□ -0.32
HMGCL-201ENST00000235958 COL5A3P25940 1745 aaPredicted RBP13.05□□□□□ -0.32
HMGCL-201ENST00000235958 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.04□□□□□ -0.32
HMGCL-201ENST00000235958 COPS6Q7L5N1 327 aa13.04□□□□□ -0.32
HMGCL-201ENST00000235958 G2E3Q7L622 706 aa13.04□□□□□ -0.32
HMGCL-201ENST00000235958 NPM2Q86SE8 214 aaKnown RBP13.04□□□□□ -0.32
HMGCL-201ENST00000235958 PHAXQ9H814 394 aaKnown RBP13.04□□□□□ -0.32
HMGCL-201ENST00000235958 C4BP0C0L5 1744 aa13.04□□□□□ -0.32
HMGCL-201ENST00000235958 CICQ96RK0 1608 aaPredicted RBP13.03□□□□□ -0.32
HMGCL-201ENST00000235958 RREB1Q92766 1687 aa13.03□□□□□ -0.32
HMGCL-201ENST00000235958 BCAR3O75815 825 aa13.03□□□□□ -0.32
HMGCL-201ENST00000235958 PHF14O94880 888 aa13.03□□□□□ -0.32
HMGCL-201ENST00000235958 SSFA2P28290 1259 aa13.03□□□□□ -0.32
HMGCL-201ENST00000235958 AIMP1Q12904 312 aaKnown RBP13.03□□□□□ -0.32
HMGCL-201ENST00000235958 TTLL7Q6ZT98 887 aa13.03□□□□□ -0.32
HMGCL-201ENST00000235958 COL23A1Q86Y22 540 aaPredicted RBP13.03□□□□□ -0.32
HMGCL-201ENST00000235958 MRPL50Q8N5N7 158 aaKnown RBP13.03□□□□□ -0.32
HMGCL-201ENST00000235958 XAGE3Q8WTP9 111 aa13.03□□□□□ -0.32
HMGCL-201ENST00000235958 BCL2L13Q9BXK5 485 aa13.03□□□□□ -0.32
HMGCL-201ENST00000235958 TBC1D2BQ9UPU7 963 aa13.03□□□□□ -0.32
HMGCL-201ENST00000235958 A0A087WZG4 1122 aa13.02□□□□□ -0.33
HMGCL-201ENST00000235958 MSH5O43196 834 aa13.02□□□□□ -0.33
HMGCL-201ENST00000235958 ADRA2BP18089 450 aa13.02□□□□□ -0.33
HMGCL-201ENST00000235958 RFC4P35249 363 aa13.02□□□□□ -0.33
HMGCL-201ENST00000235958 FLAD1Q8NFF5 587 aa13.02□□□□□ -0.33
HMGCL-201ENST00000235958 SMC4Q9NTJ3 1288 aa13.02□□□□□ -0.33
HMGCL-201ENST00000235958 RCAN3Q9UKA8 241 aa13.02□□□□□ -0.33
HMGCL-201ENST00000235958 NUP188Q5SRE5 1749 aa13.02□□□□□ -0.33
HMGCL-201ENST00000235958 R3HDM1Q15032 1099 aaKnown RBP13.01□□□□□ -0.33
HMGCL-201ENST00000235958 ANKRD13DQ6ZTN6 518 aa13.01□□□□□ -0.33
HMGCL-201ENST00000235958 DZIP3Q86Y13 1208 aaKnown RBP13.01□□□□□ -0.33
HMGCL-201ENST00000235958 PDGFDQ9GZP0 370 aaPredicted RBP13.01□□□□□ -0.33
HMGCL-201ENST00000235958 PNPLA7Q6ZV29 1317 aa13.01□□□□□ -0.33
HMGCL-201ENST00000235958 LAMB4A4D0S4 1761 aa13.01□□□□□ -0.33
HMGCL-201ENST00000235958 UBR3Q6ZT12 1888 aa13□□□□□ -0.33
HMGCL-201ENST00000235958 ZPR1O75312 459 aa13□□□□□ -0.33
HMGCL-201ENST00000235958 BRPF1P55201 1214 aaPredicted RBP13□□□□□ -0.33
HMGCL-201ENST00000235958 NARFQ9UHQ1 456 aa13□□□□□ -0.33
HMGCL-201ENST00000235958 COL15A1P39059 1388 aa12.99□□□□□ -0.33
HMGCL-201ENST00000235958 FLIIQ13045 1269 aa12.99□□□□□ -0.33
HMGCL-201ENST00000235958 SRP68Q9UHB9 627 aaKnown RBP12.99□□□□□ -0.33
HMGCL-201ENST00000235958 NOB1Q9ULX3 412 aaKnown RBP12.99□□□□□ -0.33
HMGCL-201ENST00000235958 MAP3K15Q6ZN16 1313 aa12.98□□□□□ -0.33
HMGCL-201ENST00000235958 PI4KAP2A4QPH2 592 aa12.98□□□□□ -0.33
HMGCL-201ENST00000235958 PSDA5PKW4 1024 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms