RNA–Protein interactions for RNA: ENST00000228827.7

GPN3-201, Transcript of GPN-loop GTPase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPN3, Length 1,468 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN3-201ENST00000228827 C4AP0C0L4 1744 aa18.89■□□□□ 0.61
GPN3-201ENST00000228827 COL15A1P39059 1388 aa18.89■□□□□ 0.61
GPN3-201ENST00000228827 PLEKHF1Q96S99 279 aa18.88■□□□□ 0.61
GPN3-201ENST00000228827 ZNF330Q9Y3S2 320 aaPredicted RBP18.88■□□□□ 0.61
GPN3-201ENST00000228827 HTATSF1O43719 755 aaKnown RBP18.87■□□□□ 0.61
GPN3-201ENST00000228827 DDR1Q08345 913 aa18.87■□□□□ 0.61
GPN3-201ENST00000228827 UBR2Q8IWV8 1755 aa18.87■□□□□ 0.61
GPN3-201ENST00000228827 C10orf71Q711Q0 1435 aa18.86■□□□□ 0.61
GPN3-201ENST00000228827 ZNF784Q8NCA9 323 aaPredicted RBP18.86■□□□□ 0.61
GPN3-201ENST00000228827 TEX13AQ9BXU3 409 aaPredicted RBP18.86■□□□□ 0.61
GPN3-201ENST00000228827 NARFQ9UHQ1 456 aa18.86■□□□□ 0.61
GPN3-201ENST00000228827 MYBBP1AQ9BQG0 1328 aaKnown RBP18.86■□□□□ 0.61
GPN3-201ENST00000228827 MAPK8IP3Q9UPT6 1336 aa18.86■□□□□ 0.61
GPN3-201ENST00000228827 A0A0G2JLW4 131 aa18.85■□□□□ 0.61
GPN3-201ENST00000228827 SIPA1L3O60292 1781 aaPredicted RBP18.85■□□□□ 0.61
GPN3-201ENST00000228827 PXDNLA1KZ92 1463 aa18.84■□□□□ 0.61
GPN3-201ENST00000228827 PRAMEF22A3QJZ6 481 aa18.84■□□□□ 0.61
GPN3-201ENST00000228827 A1BGP04217 495 aa18.84■□□□□ 0.61
GPN3-201ENST00000228827 TGFB2P61812 414 aa18.84■□□□□ 0.61
GPN3-201ENST00000228827 NFE2L2Q16236 605 aa18.84■□□□□ 0.61
GPN3-201ENST00000228827 PNNQ9H307 717 aaKnown RBP18.84■□□□□ 0.61
GPN3-201ENST00000228827 MIS18AQ9NYP9 233 aa18.84■□□□□ 0.61
GPN3-201ENST00000228827 POLRMTO00411 1230 aaKnown RBP18.84■□□□□ 0.61
GPN3-201ENST00000228827 TM4SF1P30408 202 aa18.84■□□□□ 0.61
GPN3-201ENST00000228827 EIF5P55010 431 aaKnown RBP18.84■□□□□ 0.61
GPN3-201ENST00000228827 TAF7Q15545 349 aaPredicted RBP18.84■□□□□ 0.61
GPN3-201ENST00000228827 BCL2L12Q9HB09 334 aa18.84■□□□□ 0.61
GPN3-201ENST00000228827 GOLGB1Q14789 3259 aaKnown RBP18.84■□□□□ 0.61
GPN3-201ENST00000228827 DPEP1P16444 411 aa18.83■□□□□ 0.6
GPN3-201ENST00000228827 THUMPD2Q9BTF0 503 aaKnown RBP18.83■□□□□ 0.6
GPN3-201ENST00000228827 USP16Q9Y5T5 823 aa18.83■□□□□ 0.6
GPN3-201ENST00000228827 PIP4K2AP48426 406 aaPredicted RBP18.82■□□□□ 0.6
GPN3-201ENST00000228827 NFIXQ14938 502 aa18.82■□□□□ 0.6
GPN3-201ENST00000228827 A0A087WZG4 1122 aa18.81■□□□□ 0.6
GPN3-201ENST00000228827 BICDL1Q6ZP65 573 aa18.81■□□□□ 0.6
GPN3-201ENST00000228827 TBC1D2BQ9UPU7 963 aa18.81■□□□□ 0.6
GPN3-201ENST00000228827 BCS1LQ9Y276 419 aa18.81■□□□□ 0.6
GPN3-201ENST00000228827 SNRPA1P09661 255 aaKnown RBP18.8■□□□□ 0.6
GPN3-201ENST00000228827 IL6STP40189 918 aaPredicted RBP18.8■□□□□ 0.6
GPN3-201ENST00000228827 NPM2Q86SE8 214 aaKnown RBP18.8■□□□□ 0.6
GPN3-201ENST00000228827 ZEB1P37275 1124 aaPredicted RBP18.79■□□□□ 0.6
GPN3-201ENST00000228827 CCDC146Q8IYE0 955 aa18.78■□□□□ 0.6
GPN3-201ENST00000228827 SERPINB2P05120 415 aa18.77■□□□□ 0.6
GPN3-201ENST00000228827 PRKRIP1Q9H875 184 aaPredicted RBP18.77■□□□□ 0.6
GPN3-201ENST00000228827 KCNA3P22001 575 aa18.77■□□□□ 0.59
GPN3-201ENST00000228827 CHRNA5P30532 468 aa18.77■□□□□ 0.59
GPN3-201ENST00000228827 RIPK4P57078 832 aa18.77■□□□□ 0.59
GPN3-201ENST00000228827 TBC1D9BQ66K14 1250 aa18.77■□□□□ 0.59
GPN3-201ENST00000228827 PNISRQ8TF01 805 aaKnown RBP18.77■□□□□ 0.59
GPN3-201ENST00000228827 KIAA1551Q9HCM1 1747 aa18.76■□□□□ 0.59
GPN3-201ENST00000228827 N4BP2Q86UW6 1770 aaPredicted RBP18.76■□□□□ 0.59
GPN3-201ENST00000228827 WDR43Q15061 677 aaKnown RBP eCLIP18.76■□□□□ 0.59
GPN3-201ENST00000228827 RRP7AQ9Y3A4 280 aaKnown RBP18.76■□□□□ 0.59
GPN3-201ENST00000228827 KIF13BQ9NQT8 1826 aa18.76■□□□□ 0.59
GPN3-201ENST00000228827 CHD4Q14839 1912 aa18.76■□□□□ 0.59
GPN3-201ENST00000228827 CAMTA2O94983 1202 aa18.75■□□□□ 0.59
GPN3-201ENST00000228827 DZIP3Q86Y13 1208 aaKnown RBP18.75■□□□□ 0.59
GPN3-201ENST00000228827 TMPOP42166 694 aaKnown RBP18.74■□□□□ 0.59
GPN3-201ENST00000228827 NEUROD2Q15784 382 aa18.74■□□□□ 0.59
GPN3-201ENST00000228827 PIM2Q9P1W9 311 aa18.74■□□□□ 0.59
GPN3-201ENST00000228827 NBPF26B4DH59 902 aa18.73■□□□□ 0.59
GPN3-201ENST00000228827 EIF4A1P60842 406 aaKnown RBP18.73■□□□□ 0.59
GPN3-201ENST00000228827 NBPF10Q6P3W6 841 aaKnown RBP18.73■□□□□ 0.59
GPN3-201ENST00000228827 ARHGAP27Q6ZUM4 889 aa18.73■□□□□ 0.59
GPN3-201ENST00000228827 NBPF15Q8N660 670 aa18.73■□□□□ 0.59
GPN3-201ENST00000228827 DALRD3Q5D0E6 543 aaKnown RBP18.72■□□□□ 0.59
GPN3-201ENST00000228827 CCDC24Q8N4L8 307 aa18.72■□□□□ 0.59
GPN3-201ENST00000228827 ADAMTS8Q9UP79 889 aa18.72■□□□□ 0.59
GPN3-201ENST00000228827 ATP10DQ9P241 1426 aa18.72■□□□□ 0.59
GPN3-201ENST00000228827 CARMIL3Q8ND23 1372 aa18.72■□□□□ 0.59
GPN3-201ENST00000228827 GIGYF1O75420 1035 aaPredicted RBP18.71■□□□□ 0.59
GPN3-201ENST00000228827 TSPYL4Q9UJ04 414 aa18.71■□□□□ 0.59
GPN3-201ENST00000228827 LMOD3Q0VAK6 560 aa18.71■□□□□ 0.59
GPN3-201ENST00000228827 RUNDC1Q96C34 613 aa18.71■□□□□ 0.59
GPN3-201ENST00000228827 SETDB2Q96T68 719 aa18.71■□□□□ 0.59
GPN3-201ENST00000228827 DLG5Q8TDM6 1919 aa18.7■□□□□ 0.58
GPN3-201ENST00000228827 SCN7AQ01118 1682 aa18.7■□□□□ 0.58
GPN3-201ENST00000228827 NGEFQ8N5V2 710 aa18.7■□□□□ 0.58
GPN3-201ENST00000228827 ZNF526Q8TF50 670 aaPredicted RBP18.7■□□□□ 0.58
GPN3-201ENST00000228827 NPHP1O15259 732 aa18.69■□□□□ 0.58
GPN3-201ENST00000228827 C2CD5Q86YS7 1000 aa18.69■□□□□ 0.58
GPN3-201ENST00000228827 PRR5LQ6MZQ0 368 aa18.68■□□□□ 0.58
GPN3-201ENST00000228827 ADCY9O60503 1353 aa18.68■□□□□ 0.58
GPN3-201ENST00000228827 ZNF652Q9Y2D9 606 aa18.67■□□□□ 0.58
GPN3-201ENST00000228827 KDM3BQ7LBC6 1761 aa18.67■□□□□ 0.58
GPN3-201ENST00000228827 NRXN2Q9P2S2 1712 aa18.67■□□□□ 0.58
GPN3-201ENST00000228827 H0YIN7 160 aa18.66■□□□□ 0.58
GPN3-201ENST00000228827 MYL6BP14649 208 aa18.66■□□□□ 0.58
GPN3-201ENST00000228827 CNBD1Q8NA66 436 aa18.66■□□□□ 0.58
GPN3-201ENST00000228827 LAS1LQ9Y4W2 734 aaKnown RBP18.66■□□□□ 0.58
GPN3-201ENST00000228827 AFDNP55196 1824 aaKnown RBP18.66■□□□□ 0.58
GPN3-201ENST00000228827 CLEC4GQ6UXB4 293 aa18.65■□□□□ 0.58
GPN3-201ENST00000228827 GPBP1L1Q9HC44 474 aaPredicted RBP18.65■□□□□ 0.58
GPN3-201ENST00000228827 TRIM35Q9UPQ4 493 aa18.65■□□□□ 0.58
GPN3-201ENST00000228827 FAM177BA6PVY3 158 aa18.65■□□□□ 0.58
GPN3-201ENST00000228827 ST5P78524 1137 aa18.65■□□□□ 0.58
GPN3-201ENST00000228827 HLFQ16534 295 aa18.65■□□□□ 0.58
GPN3-201ENST00000228827 BRIP1Q9BX63 1249 aa18.65■□□□□ 0.58
GPN3-201ENST00000228827 NIP7Q9Y221 180 aaKnown RBP eCLIP18.65■□□□□ 0.58
GPN3-201ENST00000228827 ZNF316A6NFI3 1004 aaPredicted RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms