RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 USP31Q70CQ4 1352 aa14.98□□□□□ -0.01
NUP88-201ENST00000225696 PLEKHG5O94827 1062 aa14.98□□□□□ -0.01
NUP88-201ENST00000225696 AK2P54819 239 aa14.98□□□□□ -0.01
NUP88-201ENST00000225696 KIAA2012Q0VF49 1180 aa14.98□□□□□ -0.01
NUP88-201ENST00000225696 TTC14Q96N46 770 aa14.98□□□□□ -0.01
NUP88-201ENST00000225696 SPG7Q9UQ90 795 aa14.98□□□□□ -0.01
NUP88-201ENST00000225696 ARHGEF10O15013 1369 aa14.98□□□□□ -0.01
NUP88-201ENST00000225696 SSH2Q76I76 1423 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 XRN1Q8IZH2 1706 aaKnown RBP14.97□□□□□ -0.01
NUP88-201ENST00000225696 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.97□□□□□ -0.01
NUP88-201ENST00000225696 PLEKHG3A1L390 1219 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 FAM177BA6PVY3 158 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 DYNC1I1O14576 645 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 CCDC30Q5VVM6 783 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 PPP1R42Q7Z4L9 355 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 IL17REQ8NFR9 667 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 SYAP1Q96A49 352 aaPredicted RBP14.97□□□□□ -0.01
NUP88-201ENST00000225696 SIRT1Q96EB6 747 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 ESF1Q9H501 851 aaKnown RBP14.97□□□□□ -0.01
NUP88-201ENST00000225696 AP5Z1O43299 807 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 SURF6O75683 361 aaKnown RBP14.97□□□□□ -0.01
NUP88-201ENST00000225696 ADCY5O95622 1261 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 SYT1P21579 422 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 SSH3Q8TE77 659 aa14.97□□□□□ -0.01
NUP88-201ENST00000225696 SOS1Q07889 1333 aaPredicted RBP14.97□□□□□ -0.01
NUP88-201ENST00000225696 KDRP35968 1356 aa14.96□□□□□ -0.01
NUP88-201ENST00000225696 SGSM2O43147 1006 aa14.96□□□□□ -0.01
NUP88-201ENST00000225696 UBTFL1P0CB47 393 aaPredicted RBP14.96□□□□□ -0.01
NUP88-201ENST00000225696 ZSCAN22P10073 491 aaPredicted RBP14.96□□□□□ -0.01
NUP88-201ENST00000225696 LSG1Q9H089 658 aaKnown RBP14.96□□□□□ -0.01
NUP88-201ENST00000225696 FIBPO43427 364 aa14.95□□□□□ -0.02
NUP88-201ENST00000225696 NBPF7P0C2Y1 421 aaPredicted RBP14.95□□□□□ -0.02
NUP88-201ENST00000225696 COL9A3Q14050 684 aaPredicted RBP14.95□□□□□ -0.02
NUP88-201ENST00000225696 CWC27Q6UX04 472 aaKnown RBP14.95□□□□□ -0.02
NUP88-201ENST00000225696 DDX54Q8TDD1 881 aaKnown RBP14.95□□□□□ -0.02
NUP88-201ENST00000225696 RAD50Q92878 1312 aa14.95□□□□□ -0.02
NUP88-201ENST00000225696 GIMAP6Q6P9H5 292 aa14.95□□□□□ -0.02
NUP88-201ENST00000225696 IGSF1Q8N6C5 1336 aa14.95□□□□□ -0.02
NUP88-201ENST00000225696 TMEM87AQ8NBN3 555 aa14.95□□□□□ -0.02
NUP88-201ENST00000225696 RHPN1Q8TCX5 695 aa14.95□□□□□ -0.02
NUP88-201ENST00000225696 NALCNQ8IZF0 1738 aa14.94□□□□□ -0.02
NUP88-201ENST00000225696 STX6O43752 255 aa14.94□□□□□ -0.02
NUP88-201ENST00000225696 DNTTIP2Q5QJE6 756 aaKnown RBP14.94□□□□□ -0.02
NUP88-201ENST00000225696 CCDC183Q5T5S1 534 aa14.94□□□□□ -0.02
NUP88-201ENST00000225696 NUTM2GQ5VZR2 741 aa14.94□□□□□ -0.02
NUP88-201ENST00000225696 PHF14O94880 888 aa14.94□□□□□ -0.02
NUP88-201ENST00000225696 AMPHP49418 695 aa14.94□□□□□ -0.02
NUP88-201ENST00000225696 NOLC1Q14978 699 aaKnown RBP eCLIP14.94□□□□□ -0.02
NUP88-201ENST00000225696 FAM208AQ9UK61 1670 aaKnown RBP14.93□□□□□ -0.02
NUP88-201ENST00000225696 GNAT3A8MTJ3 354 aa14.93□□□□□ -0.02
NUP88-201ENST00000225696 SRGAP3O43295 1099 aa14.93□□□□□ -0.02
NUP88-201ENST00000225696 ADCK5Q3MIX3 580 aa14.93□□□□□ -0.02
NUP88-201ENST00000225696 ZNF710Q8N1W2 664 aa14.93□□□□□ -0.02
NUP88-201ENST00000225696 PIBF1Q8WXW3 757 aa14.93□□□□□ -0.02
NUP88-201ENST00000225696 FLT4P35916 1363 aa14.93□□□□□ -0.02
NUP88-201ENST00000225696 PLCB2Q00722 1185 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 PTH1RQ03431 593 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 DNM1Q05193 864 aaKnown RBP14.92□□□□□ -0.02
NUP88-201ENST00000225696 SLC26A8Q96RN1 970 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 MAP7D2Q96T17 732 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 PRDM4Q9UKN5 801 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 SBNO1A3KN83 1393 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 F13A1P00488 732 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 CASTP20810 708 aaKnown RBP14.92□□□□□ -0.02
NUP88-201ENST00000225696 LTKP29376 864 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 POLA2Q14181 598 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 MYRIPQ8NFW9 859 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 LTV1Q96GA3 475 aaPredicted RBP14.92□□□□□ -0.02
NUP88-201ENST00000225696 FUCA2Q9BTY2 467 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 LIMCH1Q9UPQ0 1083 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 ADAMTS13Q76LX8 1427 aa14.92□□□□□ -0.02
NUP88-201ENST00000225696 AOX1Q06278 1338 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 ANXA1P04083 346 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 UBE2HP62256 183 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 ST3GAL1Q11201 340 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 UVSSAQ2YD98 709 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 HDGFL1Q5TGJ6 251 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 CCDC83Q8IWF9 413 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 USHBP1Q8N6Y0 703 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 FAM184AQ8NB25 1140 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 PRDM10Q9NQV6 1147 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 HYPKQ9NX55 129 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 TOPAZ1Q8N9V7 1692 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 KDM4AO75164 1064 aa14.91□□□□□ -0.02
NUP88-201ENST00000225696 EIF2S2P20042 333 aaKnown RBP14.91□□□□□ -0.02
NUP88-201ENST00000225696 KCNF1Q9H3M0 494 aa14.9□□□□□ -0.02
NUP88-201ENST00000225696 SMC3Q9UQE7 1217 aa14.9□□□□□ -0.02
NUP88-201ENST00000225696 FMN2Q9NZ56 1722 aa14.9□□□□□ -0.02
NUP88-201ENST00000225696 GJB2P29033 226 aa14.9□□□□□ -0.02
NUP88-201ENST00000225696 MTMR6Q9Y217 621 aa14.9□□□□□ -0.02
NUP88-201ENST00000225696 TAF7Q15545 349 aaPredicted RBP14.89□□□□□ -0.03
NUP88-201ENST00000225696 NECAB1Q8N987 351 aa14.89□□□□□ -0.03
NUP88-201ENST00000225696 PYCARDQ9ULZ3 195 aa14.89□□□□□ -0.03
NUP88-201ENST00000225696 TMEM2Q9UHN6 1383 aa14.89□□□□□ -0.03
NUP88-201ENST00000225696 PTPRUQ92729 1446 aa14.89□□□□□ -0.03
NUP88-201ENST00000225696 KCNQ3O43525 872 aa14.88□□□□□ -0.03
NUP88-201ENST00000225696 FAM173BQ6P4H8 233 aa14.88□□□□□ -0.03
NUP88-201ENST00000225696 LRRC37A3O60309 1634 aa14.88□□□□□ -0.03
NUP88-201ENST00000225696 PI4KAP2A4QPH2 592 aa14.88□□□□□ -0.03
NUP88-201ENST00000225696 RAB11FIP3O75154 756 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms