RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 FAAH2Q6GMR7 532 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 PRSS55Q6UWB4 352 aaPredicted RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 NFAM1Q8NET5 270 aaPredicted RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 HDAC2Q92769 488 aaKnown RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 PROX1Q92786 737 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 RUNDC3BQ96NL0 473 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 EBF4Q9BQW3 602 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 DEFB126Q9BYW3 111 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 GOLPH3LQ9H4A5 285 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 SYNCQ9H7C4 482 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 RNF121Q9H920 327 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 WDR41Q9HAD4 459 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 KCNK13Q9HB14 408 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 RAVER2Q9HCJ3 691 aaKnown RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 POLKQ9UBT6 870 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 POLLQ9UGP5 575 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 PILRBQ9UKJ0 227 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 ZNF346Q9UL40 294 aaKnown RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 ZNF215Q9UL58 517 aaPredicted RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 PLEKHA6Q9Y2H5 1048 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 MRPL11Q9Y3B7 192 aaKnown RBP1.9□□□□□ -2.11
SCN1A-208ENST00000625916 FER1L5A0AVI2 2057 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 SALL1Q9NSC2 1324 aa1.9□□□□□ -2.11
SCN1A-208ENST00000625916 TRAV9-2A0A087WT02 112 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 A0A1W2PPK0 400 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 NKX6-3A6NJ46 265 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 A8MVM7 634 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 SLC33A1O00400 549 aaPredicted RBP1.89□□□□□ -2.11
SCN1A-208ENST00000625916 PIGRP01833 764 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 EPCAMP16422 314 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 ZRANB3Q5FWF4 1079 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 MUC21Q5SSG8 566 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 CELF3Q5SZQ8 465 aaKnown RBP1.89□□□□□ -2.11
SCN1A-208ENST00000625916 CCDC30Q5VVM6 783 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 NAXDQ8IW45 347 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 APPL2Q8NEU8 664 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 CFAP61Q8NHU2 1237 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 ZNF622Q969S3 477 aaKnown RBP eCLIP1.89□□□□□ -2.11
SCN1A-208ENST00000625916 PTERQ96BW5 349 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 NXPE2Q96DL1 559 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 RANBP9Q96S59 729 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP1.89□□□□□ -2.11
SCN1A-208ENST00000625916 DEPPQ9NTK1 212 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 PRMT7Q9NVM4 692 aaPredicted RBP1.89□□□□□ -2.11
SCN1A-208ENST00000625916 TXNDC16Q9P2K2 825 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 FBXL4Q9UKA2 621 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 MGAT4AQ9UM21 535 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 IL16Q14005 1332 aa1.89□□□□□ -2.11
SCN1A-208ENST00000625916 TRAV24A0A0B4J272 114 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 TCP11X1B4DZS4 312 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 F5H0A9 414 aaPredicted RBP1.88□□□□□ -2.11
SCN1A-208ENST00000625916 CD22P20273 847 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 SAT1P21673 171 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 SPRP35270 261 aaPredicted RBP1.88□□□□□ -2.11
SCN1A-208ENST00000625916 ASCL1P50553 236 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 CRYBA2P53672 197 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 KRTAP10-10P60014 251 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 DDX10Q13206 875 aaKnown RBP1.88□□□□□ -2.11
SCN1A-208ENST00000625916 PCLAFQ15004 111 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 POM121L1PQ3SYA9 428 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 SPANXN4Q5MJ08 99 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 CPEB2Q7Z5Q1 589 aaKnown RBP1.88□□□□□ -2.11
SCN1A-208ENST00000625916 CCDC60Q8IWA6 550 aaPredicted RBP1.88□□□□□ -2.11
SCN1A-208ENST00000625916 MINDY1Q8N5J2 469 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 ZNF525Q8N782 197 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 BANPQ8N9N5 519 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 GTSF1Q8WW33 167 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 MPP4Q96JB8 637 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 PAPOLGQ9BWT3 736 aaKnown RBP1.88□□□□□ -2.11
SCN1A-208ENST00000625916 ACTL8Q9H568 366 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 C3orf14Q9HBI5 128 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 VNN3Q9NY84 501 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 ARMCX1Q9P291 453 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 RPS6KB2Q9UBS0 482 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 SLC12A6Q9UHW9 1150 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 SPATA2Q9UM82 520 aa1.88□□□□□ -2.11
SCN1A-208ENST00000625916 TRIM77I1YAP6 450 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 SCO2O43819 266 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 GJB3O75712 270 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 RHBDL1O75783 438 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 ATP6AP2O75787 350 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 CSN3P07498 182 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 F3P13726 295 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 CD1EP15812 388 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 FASP25445 335 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 CLDN15P56746 228 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 DCAF7P61962 342 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 UBXN2AP68543 259 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 ILF2Q12905 390 aaKnown RBP1.87□□□□□ -2.11
SCN1A-208ENST00000625916 MAATS1Q7Z4T9 603 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 CARNMT1Q8N4J0 409 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 TSPAN14Q8NG11 270 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 OR1B1Q8NGR6 318 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 LINC01006Q8NI28 216 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 FAM120BQ96EK7 910 aaKnown RBP1.87□□□□□ -2.11
SCN1A-208ENST00000625916 TIGD1Q96MW7 591 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 SIGLEC12Q96PQ1 595 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 TNFRSF13CQ96RJ3 184 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 TEX12Q9BXU0 123 aa1.87□□□□□ -2.11
SCN1A-208ENST00000625916 KCNMB3Q9NPA1 279 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms