RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 MLYCDO95822 493 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 FHP07954 510 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 ZNF37AP17032 561 aaPredicted RBP9.23□□□□□ -0.93
VRK3-216ENST00000599342 ALOX12P18054 663 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 SAT1P21673 171 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 IVDP26440 423 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 PGGT1BP53609 377 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 ITGA8P53708 1063 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 OR4D2P58180 307 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 RHAGQ02094 409 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 RBPJQ06330 500 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 DEFB134Q4QY38 66 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 SFT2D3Q587I9 215 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 ZNF766Q5HY98 468 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 ACER2Q5QJU3 275 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 CATSPEREQ5SY80 951 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 STEAP4Q687X5 459 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 FCRLBQ6BAA4 426 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 TRMT10BQ6PF06 316 aaKnown RBP9.23□□□□□ -0.93
VRK3-216ENST00000599342 TMEM207Q6UWW9 146 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 FRA10AC1Q70Z53 315 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 STRA8Q7Z7C7 330 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 TMPRSS11BQ86T26 416 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 ANKMY2Q8IV38 441 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 BEST3Q8N1M1 668 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 NKAPQ8N5F7 415 aaKnown RBP9.23□□□□□ -0.93
VRK3-216ENST00000599342 PLPP5Q8NEB5 264 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 OR4K1Q8NGD4 311 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 OR5T3Q8NGG3 340 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 M1APQ8TC57 530 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 NEIL2Q969S2 332 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 TBC1D20Q96BZ9 403 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 PWWP2AQ96N64 755 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 OR4K3Q96R72 315 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 EGFL8Q99944 293 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 AIF1LQ9BQI0 150 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 UTP23Q9BRU9 249 aaKnown RBP9.23□□□□□ -0.93
VRK3-216ENST00000599342 SARGQ9BW04 601 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 TRIM31Q9BZY9 425 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 MMP25Q9NPA2 562 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 SUCOQ9UBS9 1254 aaKnown RBP9.23□□□□□ -0.93
VRK3-216ENST00000599342 SEC14L3Q9UDX4 400 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 ZFP69BQ9UJL9 534 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 TEX264Q9Y6I9 313 aa9.23□□□□□ -0.93
VRK3-216ENST00000599342 CPAMD8Q8IZJ3 1885 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 FAM95CA0A1B0GW59 222 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 NPEPPSL1A6NEC2 478 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 CCDC188H7C350 402 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 PSMD12O00232 456 aaPredicted RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 NDC80O14777 642 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 TTI1O43156 1089 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 B4GALT2O60909 372 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 SEC31AO94979 1220 aaKnown RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 ZNF888P0CJ79 500 aaPredicted RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 AHRP35869 848 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 PAFAH1B1P43034 410 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 SCTRP47872 440 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 SLC12A2P55011 1212 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 CASP6P55212 293 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 GNG11P61952 73 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 OLR1P78380 273 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 REEP5Q00765 189 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 PMP22Q01453 160 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 OC90Q02509 493 aaPredicted RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 MGAT5Q09328 741 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 PDIA2Q13087 525 aaKnown RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 TUBA3CQ13748 450 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 FRG1Q14331 258 aaKnown RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 USP10Q14694 798 aaKnown RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 RBBP5Q15291 538 aaKnown RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 ZXDCQ2QGD7 858 aaPredicted RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.22□□□□□ -0.93
VRK3-216ENST00000599342 H3F3CQ6NXT2 135 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 TUBA3EQ6PEY2 450 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 SBSNQ6UWP8 590 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 THOC6Q86W42 341 aaKnown RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 CRLF3Q8IUI8 442 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 LURAP1LQ8IV03 231 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 SHISA5Q8N114 240 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 SLC34A3Q8N130 599 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 AFAP1L2Q8N4X5 818 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 HORMAD2Q8N7B1 307 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 AMER2Q8N7J2 671 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 TMEM178AQ8NBL3 297 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 FAM98AQ8NCA5 519 aaKnown RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 TRPV3Q8NET8 790 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 NT5CQ8TCD5 201 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 TSLPQ969D9 159 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 RELTQ969Z4 430 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 MOCOSQ96EN8 888 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 PDLIM5Q96HC4 596 aaKnown RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 VPS39Q96JC1 886 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 WDR83Q9BRX9 315 aaKnown RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 TRIM51Q9BSJ1 452 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 KCNF1Q9H3M0 494 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 PELI2Q9HAT8 420 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 PLAC1Q9HBJ0 212 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 LANCL2Q9NS86 450 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 ANKRD10Q9NXR5 420 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 NSMCE4AQ9NXX6 385 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms