RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 MPC1LP0DKB6 136 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 ENO3P13929 434 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 CREB1P16220 341 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 PDHA2P29803 388 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 IL2P60568 153 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 DCDP81605 110 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 IRF9Q00978 393 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 HSPA14Q0VDF9 509 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 BOP1Q14137 746 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 LRRC8EQ6NSJ5 796 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 CDHR3Q6ZTQ4 885 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 CARFQ8N187 725 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 PLD6Q8N2A8 252 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 ALKBH8Q96BT7 664 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 MAGED4Q96JG8 741 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 SMR3AQ99954 134 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 DERL2Q9GZP9 239 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 VPS11Q9H270 941 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 OR52A5Q9H2C5 316 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 C1GALT1Q9NS00 363 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 CCM2LQ9NUG4 571 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 PLA2G3Q9NZ20 509 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 ACSL5Q9ULC5 683 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 HMGB1P1B2RPK0 211 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 MAP3K7O43318 606 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 TYROBPO43914 113 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 OR2B3O76000 313 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 MATN4O95460 622 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 LTA4HP09960 611 aaKnown RBP13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 CD1DP15813 335 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 ACADLP28330 430 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 RGS4P49798 205 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 PMP22Q01453 160 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 CEBPEQ15744 281 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 INAQ16352 499 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 SHISA6Q6ZSJ9 500 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 TBC1D1Q86TI0 1168 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 C4orf33Q8N1A6 199 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 OR4E2Q8NGC2 313 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 KCTD4Q8WVF5 259 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 NXNL1Q96CM4 212 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 LINGO1Q96FE5 620 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 FOXC2Q99958 501 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 WWP1Q9H0M0 922 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 MED4Q9NPJ6 270 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 TXLNGQ9NUQ3 528 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 IRAK4Q9NWZ3 460 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 DCDC2Q9UHG0 476 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 IKZF3Q9UKT9 509 aa13.23□□□□□ -0.29
SHKBP1-218ENST00000598907 CCDC189A1A4V9 331 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 DYTNA2CJ06 578 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 SOCS6O14544 535 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 MMP11P24347 488 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 CRHR1P34998 444 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 MAGOHP61326 146 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 ATP6V0D1P61421 351 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 CSHL1Q14406 222 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 ACAP2Q15057 778 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 TSNAXIP1Q2TAA8 658 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 TUBB8Q3ZCM7 444 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 SYTL3Q4VX76 610 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 MRPL14Q6P1L8 145 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 PIWIL4Q7Z3Z4 852 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 ISCA2Q86U28 154 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 PRIMA1Q86XR5 153 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 SPATA6LQ8N4H0 392 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 TMEM151AQ8N4L1 468 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 GOLGA6L1Q8N7Z2 621 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 ADAMTS18Q8TE60 1221 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 APOPT1Q96IL0 206 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 C12orf66Q96MD2 445 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 SMC6Q96SB8 1091 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 INSM2Q96T92 566 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 SPRTNQ9H040 489 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 CXXC4Q9H2H0 198 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 NMRAL1Q9HBL8 299 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 DLL4Q9NR61 685 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 ZNF358Q9NW07 568 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 TNFRSF10DQ9UBN6 386 aa13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 RUVBL2Q9Y230 463 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 RPH3AQ9Y2J0 694 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 NSD1Q96L73 2696 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-218ENST00000598907 ANKRD12Q6UB98 2062 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 TRAV17A0A0B4J275 112 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 GFYI3L273 518 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 COPEO14579 308 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 PRPF4O43172 522 aaKnown RBP eCLIP13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 ZBTB14O43829 449 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 GLRA3O75311 464 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 WISP2O76076 250 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 RASAL1O95294 804 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 CRYABP02511 175 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 CTSBP07858 339 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 CD63P08962 238 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 CCT5P48643 541 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 TNFSF10P50591 281 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 SLC18A1P54219 525 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 FAM83EQ2M2I3 478 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 NKAIN1Q4KMZ8 207 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms