RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 OR5M11Q96RB7 305 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TAAR9Q96RI9 348 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SERPINI1Q99574 410 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TXN2Q99757 166 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SSX3Q99909 188 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CHCHD6Q9BRQ6 235 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TCEAL7Q9BRU2 100 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 LRFN3Q9BTN0 628 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 EFHD1Q9BUP0 239 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ALG8Q9BVK2 526 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SARGQ9BW04 601 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 GTPBP2Q9BX10 602 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 GSDMCQ9BYG8 508 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TXLNGYQ9BZA5 131 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ZMYND12Q9H0C1 365 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 METTL9Q9H1A3 318 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 BLZF1Q9H2G9 400 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ASB7Q9H672 318 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 GAREM1Q9H706 876 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CATSPERBQ9H7T0 1116 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CHMP1AQ9HD42 196 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 MYOZ1Q9NP98 299 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 TREM1Q9NP99 234 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PLSCR4Q9NRQ2 329 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SEMA4GQ9NTN9 838 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ZSCAN32Q9NX65 697 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 BABAM2Q9NXR7 383 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 OBP2AQ9NY56 170 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 COQ3Q9NZJ6 369 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TMEM216Q9P0N5 145 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SH3BP4Q9P0V3 963 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 XPR1Q9UBH6 696 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CTSFQ9UBX1 484 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 DCDC2Q9UHG0 476 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TSPYL4Q9UJ04 414 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CCNL1Q9UK58 526 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 AMFRQ9UKV5 643 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SLC39A10Q9ULF5 831 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PCDHGB4Q9UN71 923 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 C19orf53Q9UNZ5 99 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 LIPT1Q9Y234 373 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 DLGAP4Q9Y2H0 992 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 KCNK7Q9Y2U2 307 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 NDUFAF1Q9Y375 327 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PCDHGB1Q9Y5G3 927 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 FKBP7Q9Y680 259 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 AP4B1Q9Y6B7 739 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 COX11Q9Y6N1 276 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 DDX60Q8IY21 1712 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 MARF1Q9Y4F3 1742 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 RIMBP3Q9UFD9 1639 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 MAP3K4Q9Y6R4 1608 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ANKRD36CQ5JPF3 1778 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 MYH9P35579 1960 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 SPEF2Q9C093 1822 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ZMYM2Q9UBW7 1377 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 FMN2Q9NZ56 1722 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 NWD1Q149M9 1564 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 A0A087WXM4 84 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 A0A1B0GVM2 712 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 C9orf170A2RU37 121 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 LRRC3CA6NJW4 275 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 RFPL4AA6NLU0 287 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 E9PAM4 449 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 RFPL4AL1F8VTS6 287 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 DDX39AO00148 427 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 CES2O00748 559 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ZNF197O14709 1029 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ITGB1BP1O14713 200 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 MAGEB2O15479 319 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 GYG2O15488 501 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SEC14L5O43304 696 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 AKR7A2O43488 359 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 RAD51CO43502 376 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 B4GAT1O43505 415 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 TBC1D4O60343 1298 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 PRKRAO75569 313 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 TM7SF2O76062 418 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 CAMTA2O94983 1202 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SOX30O94993 753 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 NXPH3O95157 252 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 BCL10O95999 233 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 SERPINA5P05154 406 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 UGT2B4P06133 528 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 FGF4P08620 206 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ELFN1P0C7U0 828 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 PLA2G4BP0C869 781 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 IL7P13232 177 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 PKMP14618 531 aaKnown RBP3.14□□□□□ -1.91
VPS35-208ENST00000568612 JUPP14923 745 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 CD1EP15812 388 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 ZNF30P17039 623 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 MMP8P22894 467 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 GIFP27352 417 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 IL1R2P27930 398 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 LAP3P28838 519 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 IL12AP29459 219 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 CD40LGP29965 261 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 HOXA9P31269 272 aa3.14□□□□□ -1.91
VPS35-208ENST00000568612 NUP62P37198 522 aaPredicted RBP3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms