RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 IL16Q14005 1332 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 CCDC189A1A4V9 331 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 A8MV72 311 aaPredicted RBP3.16□□□□□ -1.9
VPS13C-208ENST00000559119 K7EQG2 157 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 PTGESO14684 152 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 MAGEB2O15479 319 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 TNFSF12O43508 249 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 ATP6AP2O75787 350 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 PSMC6P62333 389 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 POLR2LP62875 67 aaKnown RBP3.16□□□□□ -1.9
VPS13C-208ENST00000559119 EPS8Q12929 822 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 LRRC49Q8IUZ0 686 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 CCDC60Q8IWA6 550 aaPredicted RBP3.16□□□□□ -1.9
VPS13C-208ENST00000559119 OR5M9Q8NGP3 310 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 RSRC1Q96IZ7 334 aaKnown RBP3.16□□□□□ -1.9
VPS13C-208ENST00000559119 CPNE1Q99829 537 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 CHCHD6Q9BRQ6 235 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 ACTL8Q9H568 366 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 MRPL15Q9P015 296 aaKnown RBP3.16□□□□□ -1.9
VPS13C-208ENST00000559119 POLKQ9UBT6 870 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 ZNF69Q9UC07 566 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 FBXL4Q9UKA2 621 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 PILRBQ9UKJ0 227 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 NEDD4P46934 1319 aa3.16□□□□□ -1.9
VPS13C-208ENST00000559119 A0A1W2PPM1 405 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 NKX6-3A6NJ46 265 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 A8MVM7 634 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 INPP4BO15327 924 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 GSRP00390 522 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 CHRNA3P32297 505 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 ILF2Q12905 390 aaKnown RBP3.15□□□□□ -1.91
VPS13C-208ENST00000559119 GCKRQ14397 625 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 TIMM50Q3ZCQ8 353 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 DET1Q7L5Y6 550 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 CPEB2Q7Z5Q1 589 aaKnown RBP3.15□□□□□ -1.91
VPS13C-208ENST00000559119 EXOC8Q8IYI6 725 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 OLAHQ9NV23 265 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 POLLQ9UGP5 575 aa3.15□□□□□ -1.91
VPS13C-208ENST00000559119 GLOD5A6NK44 160 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 CCER2I3L3R5 266 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 GJB3O75712 270 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 VENTXO95231 258 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 UMPSP11172 480 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 F3P13726 295 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 CD1DP15813 335 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 HOXD13P35453 343 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 SLC1A4P43007 532 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 ITPK1Q13572 414 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 CYLC2Q14093 348 aaPredicted RBP3.14□□□□□ -1.91
VPS13C-208ENST00000559119 WTAPQ15007 396 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 NHLRC3Q5JS37 347 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 ZBTB49Q6ZSB9 765 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 MCM10Q7L590 875 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 DNAAF5Q86Y56 855 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 NXPE2Q96DL1 559 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 PGM2Q96G03 612 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 CNOT10Q9H9A5 744 aaKnown RBP3.14□□□□□ -1.91
VPS13C-208ENST00000559119 PIH1D3Q9NQM4 214 aaKnown RBP3.14□□□□□ -1.91
VPS13C-208ENST00000559119 IL17CQ9P0M4 197 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 TBC1D7Q9P0N9 293 aa3.14□□□□□ -1.91
VPS13C-208ENST00000559119 ADD3Q9UEY8 706 aaKnown RBP3.14□□□□□ -1.91
VPS13C-208ENST00000559119 PCGF2P35227 344 aa3.13□□□□□ -1.91
VPS13C-208ENST00000559119 PTPRCAPQ14761 206 aa3.13□□□□□ -1.91
VPS13C-208ENST00000559119 VWC2Q2TAL6 325 aa3.13□□□□□ -1.91
VPS13C-208ENST00000559119 C4orf50Q6ZRC1 276 aa3.13□□□□□ -1.91
VPS13C-208ENST00000559119 CERS3Q8IU89 383 aa3.13□□□□□ -1.91
VPS13C-208ENST00000559119 TEKT4Q8WW24 435 aa3.13□□□□□ -1.91
VPS13C-208ENST00000559119 NABP1Q96AH0 204 aa3.13□□□□□ -1.91
VPS13C-208ENST00000559119 PAPOLGQ9BWT3 736 aaKnown RBP3.13□□□□□ -1.91
VPS13C-208ENST00000559119 GHITMQ9H3K2 345 aa3.13□□□□□ -1.91
VPS13C-208ENST00000559119 RIMS4Q9H426 269 aaPredicted RBP3.13□□□□□ -1.91
VPS13C-208ENST00000559119 SP140LQ9H930 580 aa3.13□□□□□ -1.91
VPS13C-208ENST00000559119 DNAJC4Q9NNZ3 241 aa3.13□□□□□ -1.91
VPS13C-208ENST00000559119 SERPING1P05155 500 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 ATP5BP06576 529 aaKnown RBP3.12□□□□□ -1.91
VPS13C-208ENST00000559119 YES1P07947 543 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 FCGR2BP31994 310 aaPredicted RBP3.12□□□□□ -1.91
VPS13C-208ENST00000559119 FCGR2CP31995 323 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 EIF2DP41214 584 aaKnown RBP3.12□□□□□ -1.91
VPS13C-208ENST00000559119 RGRP47804 291 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 RILPL1Q5EBL4 403 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 NHLRC1Q6VVB1 395 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 ESAMQ96AP7 390 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 OTUB1Q96FW1 271 aaPredicted RBP3.12□□□□□ -1.91
VPS13C-208ENST00000559119 ZNF285Q96NJ3 590 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 NDNQ99608 321 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 TREX2Q9BQ50 279 aaPredicted RBP3.12□□□□□ -1.91
VPS13C-208ENST00000559119 CCDC106Q9BWC9 280 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 WDR41Q9HAD4 459 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 KCNK13Q9HB14 408 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 VPS28Q9UK41 221 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 COLEC10Q9Y6Z7 277 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 ITIH6Q6UXX5 1313 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 TNIKQ9UKE5 1360 aa3.12□□□□□ -1.91
VPS13C-208ENST00000559119 hCG_1807616A0A1W2PRN6 198 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 FSD2A1L4K1 749 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 CLDN4O14493 209 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 MYL6BP14649 208 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 EEF1B2P24534 225 aaKnown RBP3.11□□□□□ -1.91
VPS13C-208ENST00000559119 LIG4P49917 911 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms