RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 MGAT4DA6NG13 374 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 NPC1O15118 1278 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 RFPL2O75678 378 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 C8AP07357 584 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 PABPC1P11940 636 aaKnown RBP12.4□□□□□ -0.42
LDLR-207ENST00000558013 MAGEA10P43363 369 aaPredicted RBP12.4□□□□□ -0.42
LDLR-207ENST00000558013 MVDP53602 400 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 INAVAQ3KP66 663 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 SYTL3Q4VX76 610 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 LIPJQ5W064 366 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 NPAS3Q8IXF0 933 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 PSD4Q8NDX1 1056 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 OR9Q2Q8NGE9 314 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 ITFG2Q969R8 447 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 CPEB1Q9BZB8 566 aaKnown RBP12.4□□□□□ -0.42
LDLR-207ENST00000558013 HMG20AQ9NP66 347 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 FAM120CQ9NX05 1096 aaKnown RBP12.4□□□□□ -0.42
LDLR-207ENST00000558013 SPG21Q9NZD8 308 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 OBSL1O75147 1896 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 OR2A25A4D2G3 310 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 K7ESM1 405 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 SLC22A1O15245 554 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 C6orf47O95873 294 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 C9P02748 559 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 LRG1P02750 347 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 PTPN5P54829 565 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 CDH12P55289 794 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 MESP2Q0VG99 397 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 SLC13A2Q13183 592 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 MPEG1Q2M385 716 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 TRIM60Q495X7 471 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 NIPAL1Q6NVV3 410 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 ARMCX6Q7L4S7 300 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 CADM3Q8N126 398 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 OR6Q1Q8NGQ2 317 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 WDR48Q8TAF3 677 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 CLP1Q92989 425 aaKnown RBP12.4□□□□□ -0.43
LDLR-207ENST00000558013 TMEM159Q96B96 161 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 PPP1R14BQ96C90 147 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 PALMDQ9NP74 551 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 KLHL42Q9P2K6 505 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 SLC25A13Q9UJS0 675 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 MAP4K5Q9Y4K4 846 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 LYVE1Q9Y5Y7 322 aa12.4□□□□□ -0.43
LDLR-207ENST00000558013 FAM227AF5H4B4 570 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 M0R082 166 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 PLK4O00444 970 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 PSIP1O75475 530 aaKnown RBP12.39□□□□□ -0.43
LDLR-207ENST00000558013 ADRA2AP08913 450 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 GSTM1P09488 218 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 IMPDH2P12268 514 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 TYRP14679 529 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 TIMP2P16035 220 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 ZNF8P17098 575 aaPredicted RBP12.39□□□□□ -0.43
LDLR-207ENST00000558013 DOC2BQ14184 412 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 GANABQ14697 944 aaKnown RBP12.39□□□□□ -0.43
LDLR-207ENST00000558013 LSRQ86X29 649 aaPredicted RBP12.39□□□□□ -0.43
LDLR-207ENST00000558013 ELMOD1Q8N336 334 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 COPS4Q9BT78 406 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 TMEM165Q9HC07 324 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 MICAL3Q7RTP6 2002 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 CCDC88CQ9P219 2028 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 EFCAB9A8MZ26 197 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 GRM6O15303 877 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 CSTF3Q12996 717 aaKnown RBP12.39□□□□□ -0.43
LDLR-207ENST00000558013 PROX2Q3B8N5 592 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 LY6G5CQ5SRR4 150 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 TMEM220Q6QAJ8 160 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 SYTL1Q8IYJ3 562 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 FAM9CQ8IZT9 166 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 ZBTB8BQ8NAP8 495 aaPredicted RBP12.39□□□□□ -0.43
LDLR-207ENST00000558013 NFKBIDQ8NI38 313 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 PSMA8Q8TAA3 256 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 UTP15Q8TED0 518 aaKnown RBP12.39□□□□□ -0.43
LDLR-207ENST00000558013 ZNF480Q8WV37 535 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 C19orf43Q9BQ61 176 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 MROQ9BYG7 248 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 B3GNT3Q9Y2A9 372 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 EYSQ5T1H1 3165 aa12.39□□□□□ -0.43
LDLR-207ENST00000558013 PCM1Q15154 2024 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 NPIPB8E9PQR5 432 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 TNFRSF11BO00300 401 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 STSP08842 583 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 GADD45AP24522 165 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 NOGQ13253 232 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 SP140Q13342 867 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 PPIGQ13427 754 aaKnown RBP eCLIP12.38□□□□□ -0.433e-7■■□□□ 11.4
LDLR-207ENST00000558013 STARD3Q14849 445 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 HIST2H2ACQ16777 129 aaPredicted RBP12.38□□□□□ -0.43
LDLR-207ENST00000558013 HENMT1Q5T8I9 393 aaKnown RBP12.38□□□□□ -0.43
LDLR-207ENST00000558013 PRSS48Q7RTY5 328 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 DDX53Q86TM3 631 aaKnown RBP12.38□□□□□ -0.43
LDLR-207ENST00000558013 RBM12BQ8IXT5 1001 aaKnown RBP12.38□□□□□ -0.43
LDLR-207ENST00000558013 CACTIN-AS1Q8N1I8 211 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 PGBD3Q8N328 593 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 CHTF18Q8WVB6 975 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 TBC1D20Q96BZ9 403 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 ZHX1-C8orf76Q96EF9 292 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 VMP1Q96GC9 406 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 HRASLS5Q96KN8 279 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms