RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TMBIM1Q969X1 311 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 LRRC58Q96CX6 371 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 ZHX1-C8orf76Q96EF9 292 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 IMP4Q96G21 291 aaKnown RBP7.4□□□□□ -1.22
LIMA1-216ENST00000552909 PSKH2Q96QS6 385 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 MYOCQ99972 504 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 TBL1YQ9BQ87 522 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 MCMBPQ9BTE3 642 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 FICDQ9BVA6 458 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 CINPQ9BW66 212 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-216ENST00000552909 GTPBP2Q9BX10 602 aaKnown RBP7.4□□□□□ -1.22
LIMA1-216ENST00000552909 FSD1LQ9BXM9 530 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 CPEB1Q9BZB8 566 aaKnown RBP7.4□□□□□ -1.22
LIMA1-216ENST00000552909 PCED1AQ9H1Q7 454 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 RHOJQ9H4E5 214 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 MRM3Q9HC36 420 aaKnown RBP7.4□□□□□ -1.22
LIMA1-216ENST00000552909 CASS4Q9NQ75 786 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 PAQR5Q9NXK6 330 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-216ENST00000552909 NSMCE4AQ9NXX6 385 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 DLL3Q9NYJ7 618 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 WBP11Q9Y2W2 641 aaKnown RBP7.4□□□□□ -1.22
LIMA1-216ENST00000552909 BOLA1Q9Y3E2 137 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 V9GYQ6 96 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 TMEM131Q92545 1883 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 LAMA5O15230 3695 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 CEP295Q9C0D2 2601 aa7.4□□□□□ -1.22
LIMA1-216ENST00000552909 A0A1W2PQU0 124 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 DCDC2BA2VCK2 349 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 ARHGAP33O14559 1287 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 SLC7A4O43246 635 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 RNGTTO60942 597 aaKnown RBP7.4□□□□□ -1.23
LIMA1-216ENST00000552909 TSPAN9O75954 239 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 PCDH8O95206 1070 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 MMP2P08253 660 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 CCDC159P0C7I6 412 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 GNSP15586 552 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 TIMP2P16035 220 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 CAPN3P20807 821 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 ATP5F1P24539 256 aaPredicted RBP7.4□□□□□ -1.23
LIMA1-216ENST00000552909 GTF2E2P29084 291 aaKnown RBP7.4□□□□□ -1.23
LIMA1-216ENST00000552909 NPY2RP49146 381 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 ST13P50502 369 aaKnown RBP7.4□□□□□ -1.23
LIMA1-216ENST00000552909 CCR5P51681 352 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 KPNA2P52292 529 aaKnown RBP7.4□□□□□ -1.23
LIMA1-216ENST00000552909 PGGT1BP53609 377 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 ZNF45Q02386 682 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 LIPEQ05469 1076 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 GRIK2Q13002 908 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 TRAF3Q13114 568 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 FGL2Q14314 439 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 LARP4Q71RC2 724 aaKnown RBP eCLIP7.4□□□□□ -1.23
LIMA1-216ENST00000552909 SPATC1Q76KD6 591 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 ADAMTSL2Q86TH1 951 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 ZC3HC1Q86WB0 502 aaKnown RBP7.4□□□□□ -1.23
LIMA1-216ENST00000552909 ZDHHC13Q8IUH4 622 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 SYTL1Q8IYJ3 562 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 UBQLNLQ8IYU4 475 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 CEP76Q8TAP6 659 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 ARRDC2Q8TBH0 407 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 LGALS12Q96DT0 336 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 PPP1R16AQ96I34 528 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 LRIG1Q96JA1 1093 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 MAP6Q96JE9 813 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 MRGPRX2Q96LB1 330 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 PPP1R2P1Q96PQ5 205 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 CITED4Q96RK1 184 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 MRPL57Q9BQC6 102 aaKnown RBP7.4□□□□□ -1.23
LIMA1-216ENST00000552909 TRIM54Q9BYV2 358 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 POLR1EQ9GZS1 481 aaKnown RBP7.4□□□□□ -1.23
LIMA1-216ENST00000552909 SUV39H2Q9H5I1 410 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 EPS8L2Q9H6S3 715 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 KAT8Q9H7Z6 458 aaKnown RBP7.4□□□□□ -1.23
LIMA1-216ENST00000552909 NTN4Q9HB63 628 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 IL21RQ9HBE5 538 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 FZD3Q9NPG1 666 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 DIABLOQ9NR28 239 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 PCDHA9Q9Y5H5 950 aa7.4□□□□□ -1.23
LIMA1-216ENST00000552909 LRRK1Q38SD2 2015 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ATP6AP2A0A1C7CYW4 349 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PABPN1LA6NDY0 278 aaKnown RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 SNTNA6NMZ2 147 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 FADS2P1A8MWK0 482 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 H0Y8X5 98 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 UPK1AO00322 258 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 TM4SF5O14894 197 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ATP6AP2O75787 350 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PAK4O96013 591 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ALDOCP09972 364 aaKnown RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CR2P20023 1033 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 PSMB9P28065 219 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ADRA1AP35348 466 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 SOX11P35716 441 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 CHRNA4P43681 627 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 OR3A3P47888 321 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 ID4P47928 161 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 AFF3P51826 1226 aaKnown RBP7.39□□□□□ -1.23
LIMA1-216ENST00000552909 RAB10P61026 200 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 GPLD1P80108 840 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 RAD51Q06609 339 aa7.39□□□□□ -1.23
LIMA1-216ENST00000552909 GALNT1Q10472 559 aaPredicted RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms