RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RPF1Q9H9Y2 349 aaKnown RBP3.65□□□□□ -1.83
VPS29-205ENST00000548539 ZNF71Q9NQZ8 489 aaPredicted RBP3.65□□□□□ -1.83
VPS29-205ENST00000548539 MRPL17Q9NRX2 175 aaKnown RBP3.65□□□□□ -1.83
VPS29-205ENST00000548539 MAN1B1Q9UKM7 699 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 TMED7Q9Y3B3 224 aa3.65□□□□□ -1.83
VPS29-205ENST00000548539 BLOC1S5-TXNDC5H3BN57 136 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 RTCAO00442 366 aaKnown RBP3.64□□□□□ -1.83
VPS29-205ENST00000548539 SEC24AO95486 1093 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 PNPP00491 289 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 SLC2A2P11168 524 aaPredicted RBP3.64□□□□□ -1.83
VPS29-205ENST00000548539 RBMS1P29558 406 aaKnown RBP3.64□□□□□ -1.83
VPS29-205ENST00000548539 CHRNB4P30926 498 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 SRD5A2P31213 254 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 NR0B1P51843 470 aaKnown RBP3.64□□□□□ -1.83
VPS29-205ENST00000548539 YBEYP58557 167 aaPredicted RBP3.64□□□□□ -1.83
VPS29-205ENST00000548539 CBX3Q13185 183 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 HNRNPDQ14103 355 aaKnown RBP3.64□□□□□ -1.83
VPS29-205ENST00000548539 RPS6KA1Q15418 735 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 CDC37Q16543 378 aaPredicted RBP3.64□□□□□ -1.83
VPS29-205ENST00000548539 ACKR1Q16570 336 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 FUT11Q495W5 492 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 DHRS11Q6UWP2 260 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 LACC1Q8IV20 430 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 SERPINA12Q8IW75 414 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 CNTN4Q8IWV2 1026 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 ZC3H3Q8IXZ2 948 aaKnown RBP3.64□□□□□ -1.83
VPS29-205ENST00000548539 PEX5LQ8IYB4 626 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 PRSS35Q8N3Z0 413 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 CHCHD4Q8N4Q1 142 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 TCEANCQ8N8B7 351 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 CNBD1Q8NA66 436 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 CLEC1AQ8NC01 280 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 DYRK2Q92630 601 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 ATP6V0A1Q93050 837 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 NXPE2Q96DL1 559 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 LGALS12Q96DT0 336 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 EPSTI1Q96J88 318 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 LPAR4Q99677 370 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 PRMT1Q99873 361 aaKnown RBP3.64□□□□□ -1.83
VPS29-205ENST00000548539 FSD1Q9BTV5 496 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 THAP9Q9H5L6 903 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.64□□□□□ -1.83
VPS29-205ENST00000548539 TBC1D13Q9NVG8 400 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 DNAJC11Q9NVH1 559 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 IL36AQ9UHA7 158 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 KNSTRNQ9Y448 316 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 PFASO15067 1338 aa3.64□□□□□ -1.83
VPS29-205ENST00000548539 A0A087WUV0 522 aaPredicted RBP3.63□□□□□ -1.83
VPS29-205ENST00000548539 A0A087X0K7 114 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 CCDC162PA2VCL2 907 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 A8MVM7 634 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 TEX28O15482 410 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 MLNRO43193 412 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 VEGFDO43915 354 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 OLFM2O95897 454 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 YES1P07947 543 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 PATE4P0C8F1 98 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 PRKAR1AP10644 381 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 CPA3P15088 417 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 UCP2P55851 309 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 ARHGAP1Q07960 439 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 MRGPRG-AS1Q2M3A8 158 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 ARMCX4Q5H9R4 360 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 KCTD11Q693B1 232 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 ZNF790Q6PG37 636 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 SLC25A47Q6Q0C1 308 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 FCRLAQ7L513 359 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 COX8CQ7Z4L0 72 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 PTAR1Q7Z6K3 402 aaPredicted RBP3.63□□□□□ -1.83
VPS29-205ENST00000548539 APLFQ8IW19 511 aaPredicted RBP3.63□□□□□ -1.83
VPS29-205ENST00000548539 GPC2Q8N158 579 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 MARVELD2Q8N4S9 558 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 PSMA8Q8TAA3 256 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 ARHGAP45Q92619 1136 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 C5orf30Q96GV9 206 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 PRAM1Q96QH2 718 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 ATP6V0BQ99437 205 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 NYXQ9GZU5 481 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 GPR173Q9NS66 373 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 MAN2C1Q9NTJ4 1040 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 HACD3Q9P035 362 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 PILRBQ9UKJ0 227 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 PRDM4Q9UKN5 801 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 POMT2Q9UKY4 750 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 ANGPTL3Q9Y5C1 460 aa3.63□□□□□ -1.83
VPS29-205ENST00000548539 ABCC9O60706 1549 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 IGHV4-4A0A075B6R2 117 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 MAGEB16A2A368 324 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 MSGN1A6NI15 193 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 FAM72CH0Y354 149 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 CACNB4O00305 520 aaPredicted RBP3.62□□□□□ -1.83
VPS29-205ENST00000548539 SCO2O43819 266 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 PCDH7O60245 1069 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 AP2A2O94973 939 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 LETM1O95202 739 aaPredicted RBP3.62□□□□□ -1.83
VPS29-205ENST00000548539 EML2O95834 649 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 MT-ND2P03891 347 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 RAF1P04049 648 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 CEACAM1P13688 526 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 EZRP15311 586 aaKnown RBP3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms