RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ZNF561Q8N587 486 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ZNF676Q8N7Q3 588 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ZNF527Q8NB42 609 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 CLRN3Q8NCR9 226 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 GEMIN6Q8WXD5 167 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 POTEKPQ9BYX7 375 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 COA1Q9GZY4 146 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 HRH4Q9H3N8 390 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ZNF226Q9NYT6 803 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 FBXL21Q9UKT6 434 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 SCML2Q9UQR0 700 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 AP1M2Q9Y6Q5 423 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ZNF780AO75290 641 aaPredicted RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 BBOX1O75936 387 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 BEST1O76090 585 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 LALBAP00709 142 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ARP10275 920 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 OR1E1P30953 314 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 SSTR4P31391 388 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 RFX5P48382 616 aaPredicted RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 RRAS2P62070 204 aaPredicted RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 SRSF11Q05519 484 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 KIAA0141Q14154 515 aaPredicted RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 RAB41Q5JT25 222 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 CELF3Q5SZQ8 465 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 COL13A1Q5TAT6 717 aaPredicted RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 PRPF38BQ5VTL8 546 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 NAA40Q86UY6 237 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 TMEM200AQ86VY9 491 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 FCRL1Q96LA6 429 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 CDT1Q9H211 546 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 BTG4Q9NY30 223 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 REV1Q9UBZ9 1251 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 NRKQ7Z2Y5 1582 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 A0A1B0GVM2 712 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 FADS1O60427 444 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ADAM23O75077 832 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 PRAMEF12O95522 483 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 FHP07954 510 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 OR8U9P0C7N5 309 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 FDX1P10109 184 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 GSTM3P21266 225 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 CEBPAP49715 358 aaPredicted RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 EFEMP1Q12805 493 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ZNHIT3Q15649 155 aaPredicted RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 HMGN3Q15651 99 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 TDRD10Q5VZ19 366 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 TCEANCQ8N8B7 351 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 TXNDC5Q8NBS9 432 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 SHKBP1Q8TBC3 707 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 HSH2DQ96JZ2 352 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 AARSD1Q9BTE6 412 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 TFB2MQ9H5Q4 396 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 SNX10Q9Y5X0 201 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 EIF1AYO14602 144 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 NPC1O15118 1278 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 YY2O15391 372 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 MRPS14O60783 128 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 GCATO75600 419 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 CLDN9O95484 217 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ADRB2P07550 413 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 TACSTD2P09758 323 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 PTPN3P26045 913 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 RBMXP38159 391 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 EIF1AXP47813 144 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 DGKEP52429 567 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ZNF155Q12901 538 aaPredicted RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 SCARB2Q14108 478 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 FOXB2Q5VYV0 432 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 SLC36A4Q6YBV0 504 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 AGMOQ6ZNB7 445 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 SEMA6DQ8NFY4 1073 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 OR10Z1Q8NGY1 313 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 SCGB1C1Q8TD33 95 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 WNT8BQ93098 351 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 POPDC2Q9HBU9 364 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ABI2Q9NYB9 513 aaPredicted RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 NUDT4Q9NZJ9 180 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 OR12D3Q9UGF7 316 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 CYB5R1Q9UHQ9 305 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 SLC15A5A6NIM6 579 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ERAL1O75616 437 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 KLRC2P26717 231 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ADORA2AP29274 412 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 TNFSF8P32971 234 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ATP4BP51164 291 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 BAATQ14032 418 aaPredicted RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 HIST2H3PS2Q5TEC6 136 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 TATDN1Q6P1N9 297 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 TRAPPC5Q8IUR0 188 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 CARNMT1Q8N4J0 409 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ISCA1Q9BUE6 129 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 B3GNT5Q9BYG0 378 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 TUT1Q9H6E5 874 aaKnown RBP8.5□□□□□ -1.05
YBX3-208ENST00000540447 ASB8Q9H765 288 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 ARNT2Q9HBZ2 717 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 NDRG3Q9UGV2 375 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 PTCH2Q9Y6C5 1203 aa8.5□□□□□ -1.05
YBX3-208ENST00000540447 PQBP1O60828 265 aaKnown RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 PIGRP01833 764 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms