RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PGAM4Q8N0Y7 254 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 SAP25Q8TEE9 199 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 PPM1MQ96MI6 270 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 QRFPRQ96P65 431 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 REXO4Q9GZR2 422 aaKnown RBP20.09■□□□□ 0.81
VPS28-208ENST00000527797 KLHL25Q9H0H3 589 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 ABCG4Q9H172 646 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 WDR41Q9HAD4 459 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 EVA1BQ9NVM1 165 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 MAPRE3Q9UPY8 281 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 LRIT2A6NDA9 550 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 PATE3B3GLJ2 98 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 PLPP1O14494 284 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 LRATO95237 230 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 PVRP15151 417 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 CDH3P22223 829 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 DGKQP52824 942 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 ZNF763Q0D2J5 394 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 TLR1Q15399 786 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 LPAL2Q16609 132 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 FAM174BQ3ZCQ3 159 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 GLIPR1L2Q4G1C9 344 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 SLC23A3Q6PIS1 610 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 RIMKLAQ8IXN7 391 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 CDC26Q8NHZ8 85 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 NUDT8Q8WV74 236 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 SLC13A3Q8WWT9 602 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 STARD8Q92502 1023 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 TESCQ96BS2 214 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 SEMA6CQ9H3T2 930 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 IL21RQ9HBE5 538 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 GID8Q9NWU2 228 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 MAP10Q9P2G4 905 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 PILRAQ9UKJ1 303 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 ZDBF2Q9HCK1 2354 aa20.08■□□□□ 0.8
VPS28-208ENST00000527797 A0A0J9YVX5 310 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 AKAP10O43572 662 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 GLB1P16278 677 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 ALDH4A1P30038 563 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 HNRNPH1P31943 449 aaKnown RBP20.07■□□□□ 0.8
VPS28-208ENST00000527797 CCT8P50990 548 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 C21orf58P58505 322 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 SPANXN4Q5MJ08 99 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 CCNYL2Q5T2Q4 361 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 IRGCQ6NXR0 463 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 ZCCHC8Q6NZY4 707 aaKnown RBP20.07■□□□□ 0.8
VPS28-208ENST00000527797 RIPOR1Q6ZS17 1223 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 ASPGQ86U10 573 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 GFM2Q969S9 779 aaKnown RBP20.07■□□□□ 0.8
VPS28-208ENST00000527797 OR2A5Q96R48 311 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 ZFYVE21Q9BQ24 234 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 CROTQ9UKG9 612 aa20.07■□□□□ 0.8
VPS28-208ENST00000527797 KNL1Q8NG31 2342 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 ARHGAP10A1A4S6 786 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 ASPDHA6ND91 283 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 ARHGAP33O14559 1287 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 CTSVO60911 334 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 CER1O95813 267 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 STATHP02808 62 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 GBAP04062 536 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 PGRP06401 933 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 SYPP08247 313 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 S100A3P33764 101 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 BSGP35613 385 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 STXBP1P61764 594 aaKnown RBP20.06■□□□□ 0.8
VPS28-208ENST00000527797 NFYCQ13952 458 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 DPY19L1Q2PZI1 675 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 HKDC1Q2TB90 917 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 ADPRMQ3LIE5 342 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 TOR1AIP1Q5JTV8 583 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 NUDT13Q86X67 352 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 SCUBE1Q8IWY4 988 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 SRFBP1Q8NEF9 429 aaKnown RBP20.06■□□□□ 0.8
VPS28-208ENST00000527797 AHCYL2Q96HN2 611 aaKnown RBP20.06■□□□□ 0.8
VPS28-208ENST00000527797 FCRL4Q96PJ5 515 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 SORBS1Q9BX66 1292 aaKnown RBP20.06■□□□□ 0.8
VPS28-208ENST00000527797 ADAM29Q9UKF5 820 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 PADI4Q9UM07 663 aa20.06■□□□□ 0.8
VPS28-208ENST00000527797 PRPF19Q9UMS4 504 aaKnown RBP20.06■□□□□ 0.8
VPS28-208ENST00000527797 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.06■□□□□ 0.8
VPS28-208ENST00000527797 FAM86C2PA6NEL3 165 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 RTCAO00442 366 aaKnown RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 CAPN5O15484 640 aaPredicted RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 TPP2P29144 1249 aaPredicted RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 GPR3P46089 330 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 ARFIP1P53367 373 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 PSME3P61289 254 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 SRSF11Q05519 484 aaKnown RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 RGS1Q08116 209 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 HYAL2Q12891 473 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 PWP1Q13610 501 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 PGS1Q32NB8 556 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 PAGE3Q5JUK9 113 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 OR4C11Q6IEV9 310 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 SLC2A7Q6PXP3 512 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 BNC2Q6ZN30 1099 aaPredicted RBP20.05■□□□□ 0.8
VPS28-208ENST00000527797 VN1R4Q7Z5H5 301 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 UBE3DQ7Z6J8 389 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 OR4C6Q8NH72 309 aa20.05■□□□□ 0.8
VPS28-208ENST00000527797 NT5CQ8TCD5 201 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms