RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 TBCCD1Q9NVR7 557 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 RAPGEFL1Q9UHV5 662 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 TPRKBQ9Y3C4 175 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 CCDC88CQ9P219 2028 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 TRIM43BA6NCK2 446 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 E9PQ18 207 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 H3BM21 787 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 SAP18O00422 153 aaKnown RBP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 SPINT1O43278 529 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 SUV39H1O43463 412 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 WBP4O75554 376 aaKnown RBP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 OPN1SWP03999 348 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF8P17098 575 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 TNFRSF1BP20333 461 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 DDX6P26196 483 aaKnown RBP eCLIP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 ALDH4A1P30038 563 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 RRM2P31350 389 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 PCGF2P35227 344 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 IDUAP35475 653 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 NNMTP40261 264 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 PSMD7P51665 324 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 CXCR4P61073 352 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 HBA1P69905 142 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 NPRL3Q12980 569 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 ANXA8L1Q5VT79 327 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 MED27Q6P2C8 311 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 ANGPTL8Q6UXH0 198 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 Q6ZPB1 254 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 DCDC5Q6ZRR9 648 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 BTLAQ7Z6A9 289 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 FAM124AQ86V42 546 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 TSPYL5Q86VY4 417 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 SYTL1Q8IYJ3 562 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 PARP8Q8N3A8 854 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF557Q8N988 423 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF540Q8NDQ6 660 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 VPS37AQ8NEZ2 397 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 NDNFQ8TB73 568 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 RNF217Q8TC41 542 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 APH1BQ8WW43 257 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 TRIM43Q96BQ3 446 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 YIPF6Q96EC8 236 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 FOPNLQ96NB1 174 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 EPYCQ99645 322 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 PITX2Q99697 317 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 TMEM184CQ9NVA4 438 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 LMCD1Q9NZU5 365 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 DKK3Q9UBP4 350 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 KCNE2Q9Y6J6 123 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 K7ESM1 405 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 RNASET2O00584 256 aaKnown RBP9.47□□□□□ -0.89
CLIP1-204ENST00000501271 PCDHGA12O60330 932 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 FAM20BO75063 409 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 ETFAP13804 333 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 NPPBP16860 134 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 PPIBP23284 216 aaKnown RBP9.47□□□□□ -0.89
CLIP1-204ENST00000501271 GSSP48637 474 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 LSM3P62310 102 aaKnown RBP9.47□□□□□ -0.89
CLIP1-204ENST00000501271 RPP38P78345 283 aaKnown RBP9.47□□□□□ -0.89
CLIP1-204ENST00000501271 MC1RQ01726 317 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 MEF2AQ02078 507 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF763Q0D2J5 394 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 DGCR6Q14129 220 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 SLBPQ14493 270 aaKnown RBP eCLIP9.47□□□□□ -0.89
CLIP1-204ENST00000501271 ADPRMQ3LIE5 342 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 ARHGAP15Q53QZ3 475 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 ARMCX6Q7L4S7 300 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 COMMD6Q7Z4G1 85 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF554Q86TJ5 538 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 IGFN1Q86VF2 1251 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.47□□□□□ -0.892e-8■■■□□ 16.2
CLIP1-204ENST00000501271 CIDECQ96AQ7 238 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-204ENST00000501271 DOHHQ9BU89 302 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 SPNS1Q9H2V7 528 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 PALMDQ9NP74 551 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 ADPRHL2Q9NX46 363 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 SCN3BQ9NY72 215 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 MARK1Q9P0L2 795 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 TBC1D14Q9P2M4 693 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF282Q9UDV7 671 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-204ENST00000501271 ACSL6Q9UKU0 697 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 CORO2BQ9UQ03 480 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 PADI2Q9Y2J8 665 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 KPNA3O00505 521 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-204ENST00000501271 TOR1BO14657 336 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 RGS10O43665 173 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 DPM1O60762 260 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 LILRB5O75023 590 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 C6orf47O95873 294 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 HNRNPCP07910 306 aaKnown RBP eCLIP9.47□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF12P17014 697 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 PTPN2P17706 415 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 PSMB9P28065 219 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 CRATP43155 626 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 ATP1A4Q13733 1029 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 STARD3Q14849 445 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 CLCA4Q14CN2 919 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 MPEG1Q2M385 716 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 TCEAL5Q5H9L2 206 aa9.47□□□□□ -0.89
CLIP1-204ENST00000501271 SYT6Q5T7P8 510 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms