RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 SKP1P63208 163 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 IRF8Q02556 426 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 KLC1Q07866 573 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 PCDH1Q08174 1060 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 SETDB1Q15047 1291 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 HIST2H2ACQ16777 129 aaPredicted RBP16.45■□□□□ 0.22
MDC1-206ENST00000489540 VWA2Q5GFL6 755 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 TECRLQ5HYJ1 363 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 PAGE2BQ5JRK9 111 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 HIST2H2AA3Q6FI13 130 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 ABHD13Q7L211 337 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 PPP1R32Q7Z5V6 425 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 AFAP1L2Q8N4X5 818 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 MOCOSQ96EN8 888 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 ABHD17AQ96GS6 310 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 SCYL1Q96KG9 808 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 CRB3Q9BUF7 120 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 ZNF358Q9NW07 568 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 P4HTMQ9NXG6 502 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 HEATR5BQ9P2D3 2071 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 PRB1P04280 392 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 EPB42P16452 691 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 ALOX12P18054 663 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 IL1RNP18510 177 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 CCL11P51671 97 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 C19orf57Q0VDD7 668 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 DOC2AQ14183 400 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 PCBP2Q15366 365 aaKnown RBP eCLIP16.45■□□□□ 0.22
MDC1-206ENST00000489540 SHISA6Q6ZSJ9 500 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 LCA5Q86VQ0 697 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 C9orf43Q8TAL5 461 aaPredicted RBP16.45■□□□□ 0.22
MDC1-206ENST00000489540 ZCCHC10Q8TBK6 192 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 ACMSDQ8TDX5 336 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 CREB3L4Q8TEY5 395 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 MRPL57Q9BQC6 102 aaKnown RBP16.45■□□□□ 0.22
MDC1-206ENST00000489540 SLC6A16Q9GZN6 736 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 CLK4Q9HAZ1 481 aaKnown RBP16.45■□□□□ 0.22
MDC1-206ENST00000489540 C3orf18Q9UK00 162 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 NAALAD2Q9Y3Q0 740 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 ASB1Q9Y576 335 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 ANGPTL3Q9Y5C1 460 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 ANKRD12Q6UB98 2062 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 ANKDD1BA6NHY2 528 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 SGK494L7N484 410 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 AGPSO00116 658 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 PCDH17O14917 1159 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 PRAMEF4O60810 478 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 KLHL18O94889 574 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 EPORP19235 508 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 IL10P22301 178 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 HPDP32754 393 aaPredicted RBP16.44■□□□□ 0.22
MDC1-206ENST00000489540 EMP2P54851 167 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 STXBP1P61764 594 aaKnown RBP16.44■□□□□ 0.22
MDC1-206ENST00000489540 SNRPNP63162 240 aaKnown RBP16.44■□□□□ 0.22
MDC1-206ENST00000489540 CHIT1Q13231 466 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 E2F2Q14209 437 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 NAA30Q147X3 362 aaPredicted RBP16.44■□□□□ 0.22
MDC1-206ENST00000489540 RBBP7Q16576 425 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 PRAMEF9Q5VWM5 478 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 CPZQ66K79 652 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 WDR93Q6P2C0 686 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 PRSS41Q7RTY9 318 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 PRSS58Q8IYP2 241 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 ZNF843Q8N446 348 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 CLEC1AQ8NC01 280 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 OR51Q1Q8NH59 317 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 UBE2E3Q969T4 207 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 TRIM55Q9BYV6 548 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 MRPL46Q9H2W6 279 aaKnown RBP16.44■□□□□ 0.22
MDC1-206ENST00000489540 CPSF2Q9P2I0 782 aaKnown RBP16.44■□□□□ 0.22
MDC1-206ENST00000489540 G3BP2Q9UN86 482 aaKnown RBP16.44■□□□□ 0.22
MDC1-206ENST00000489540 NBEAQ8NFP9 2946 aa16.44■□□□□ 0.22
MDC1-206ENST00000489540 GALR3O60755 368 aaPredicted RBP16.43■□□□□ 0.22
MDC1-206ENST00000489540 SMIM24O75264 130 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 CLEC3AO75596 197 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 DNAJB5O75953 348 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 WFS1O76024 890 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 BMP10O95393 424 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 HEXBP07686 556 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 PIK3CGP48736 1102 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 VSNL1P62760 191 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 MAT1AQ00266 395 aaKnown RBP16.43■□□□□ 0.22
MDC1-206ENST00000489540 CHAF1BQ13112 559 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 SYT16Q17RD7 645 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 DCAF10Q5QP82 559 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 TCTN3Q6NUS6 607 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 LAPTM4BQ86VI4 370 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 PDSS2Q86YH6 399 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 TMEM151BQ8IW70 566 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.43■□□□□ 0.22
MDC1-206ENST00000489540 TEX9Q8N6V9 391 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 UTP15Q8TED0 518 aaKnown RBP16.43■□□□□ 0.22
MDC1-206ENST00000489540 RHBGQ9H310 441 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 ATP13A2Q9NQ11 1180 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 XPR1Q9UBH6 696 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 ZNF490Q9ULM2 529 aaPredicted RBP16.43■□□□□ 0.22
MDC1-206ENST00000489540 PCDHGA9Q9Y5G4 932 aaKnown RBP16.43■□□□□ 0.22
MDC1-206ENST00000489540 HS3ST3B1Q9Y662 390 aa16.43■□□□□ 0.22
MDC1-206ENST00000489540 IDSB3KWA1 339 aa16.42■□□□□ 0.22
MDC1-206ENST00000489540 SOCS6O14544 535 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms