RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 RCAN2Q14206 197 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 NRF1Q16656 503 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 BEX5Q5H9J7 111 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 NCBP2-AS2Q69YL0 99 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 SNX20Q7Z614 316 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 MCOLN2Q8IZK6 566 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 KIF2BQ8N4N8 673 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 OR51Q1Q8NH59 317 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 NEIL3Q8TAT5 605 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 ASB15Q8WXK1 588 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 SGCZQ96LD1 299 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 NDST4Q9H3R1 872 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 ACKR4Q9NPB9 350 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 DEPPQ9NTK1 212 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 KCMF1Q9P0J7 381 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 INTUQ9ULD6 942 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 BOKQ9UMX3 212 aaPredicted RBP7.43□□□□□ -1.22
USP54-211ENST00000474929 EML6Q6ZMW3 1958 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 A0A0A6YYK5 440 aaPredicted RBP7.42□□□□□ -1.22
USP54-211ENST00000474929 FEZF1A0PJY2 475 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 LRRD1A4D1F6 860 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 SYNDIG1LA6NDD5 238 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 KCNK1O00180 336 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 SLC16A5O15375 505 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 SIAH2O43255 324 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 CCNDBP1O95273 360 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 SERPINC1P01008 464 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 P04436 131 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 TPBGLP0DKB5 382 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 PYGBP11216 843 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 SLC25A16P16260 332 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 ZNF16P17020 682 aaPredicted RBP7.42□□□□□ -1.22
USP54-211ENST00000474929 ENDOUP21128 410 aaKnown RBP7.42□□□□□ -1.22
USP54-211ENST00000474929 IGFBP5P24593 272 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 CPOXP36551 454 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 ACVR1BP36896 505 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 GZMKP49863 264 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 RELAQ04206 551 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 PCDH1Q08174 1060 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 PKP1Q13835 747 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 TERF2Q15554 542 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 FAM120AOSQ5T036 256 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 MEI1Q5TIA1 1274 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 NIPAL1Q6NVV3 410 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 ZNF704Q6ZNC4 412 aaPredicted RBP7.42□□□□□ -1.22
USP54-211ENST00000474929 RTL4Q6ZR62 310 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 DNM1P46Q6ZS02 220 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 FAM47EQ6ZV65 393 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 LUZP2Q86TE4 346 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 TAX1BP1Q86VP1 789 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 CNTD1Q8N815 330 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 OR6P1Q8NGX9 317 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 HMGCLL1Q8TB92 370 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 ELMO1Q92556 727 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 GCDHQ92947 438 aaPredicted RBP7.42□□□□□ -1.22
USP54-211ENST00000474929 CAPZA3Q96KX2 299 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 PANX2Q96RD6 677 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 MIPEPQ99797 713 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 TM9SF2Q99805 663 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 WDR83Q9BRX9 315 aaKnown RBP7.42□□□□□ -1.22
USP54-211ENST00000474929 ZNF670Q9BS34 389 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 AARSD1Q9BTE6 412 aaKnown RBP7.42□□□□□ -1.22
USP54-211ENST00000474929 TSSK1BQ9BXA7 367 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 PRDM14Q9GZV8 571 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 EPB41L4BQ9H329 900 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 ZNF703Q9H7S9 590 aaPredicted RBP7.42□□□□□ -1.22
USP54-211ENST00000474929 CALHM2Q9HA72 323 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 SACM1LQ9NTJ5 587 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 SPRR3Q9UBC9 169 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 FAM153AQ9UHL3 310 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 PACSIN3Q9UKS6 424 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 VPS9D1Q9Y2B5 631 aa7.42□□□□□ -1.22
USP54-211ENST00000474929 LOC285095A0A1B0GVY8 99 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 PINLYPA6NC86 204 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 C5orf60A6NFR6 353 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 TMEM191CA6NGB0 347 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 OVOL3O00110 214 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 MSTNO14793 375 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 PPP1R12AO14974 1030 aaPredicted RBP7.41□□□□□ -1.22
USP54-211ENST00000474929 KIF5CO60282 957 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 CCDC172P0C7W6 258 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 RARAP10276 462 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 ACRV1P26436 265 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 KCNJ2P63252 427 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 RHAGQ02094 409 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 ZBTB17Q13105 803 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 GAB1Q13480 694 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 PDK1Q15118 436 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 TAF1AQ15573 450 aaPredicted RBP7.41□□□□□ -1.22
USP54-211ENST00000474929 HKDC1Q2TB90 917 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 P3H1Q32P28 736 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 CLEC2AQ6UVW9 174 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 SHISA2Q6UWI4 295 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 TREML4Q6UXN2 200 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 SPNS2Q8IVW8 549 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 MAP7D3Q8IWC1 876 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 ARHGEF39Q8N4T4 335 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 RAD51AP1Q96B01 352 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 TRIM11Q96F44 468 aa7.41□□□□□ -1.22
USP54-211ENST00000474929 SCYL1Q96KG9 808 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms