RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 TIGD3Q6B0B8 471 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 GRHL2Q6ISB3 625 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 UNC5DQ6UXZ4 953 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 HSDL2Q6YN16 418 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 PTCHD4Q6ZW05 846 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 GPR155Q7Z3F1 870 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 RASAL3Q86YV0 1011 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 NAT16Q8N8M0 369 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 C2orf69Q8N8R5 385 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 OR52N2Q8NGI0 321 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 PIH1D2Q8WWB5 315 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 PYCR2Q96C36 320 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 CCDC97Q96F63 343 aaPredicted RBP5.9□□□□□ -1.46
HERC4-209ENST00000473533 VPS51Q9UID3 782 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 MGAT4BQ9UQ53 548 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 ZNF451Q9Y4E5 1061 aa5.9□□□□□ -1.46
HERC4-209ENST00000473533 ANKRD12Q6UB98 2062 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 ANKRD34BA5PLL1 514 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 AGAP14A8MT82 685 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 H0YIV9 168 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 LGI1O95970 557 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 IL1AP01583 271 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 STSP08842 583 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 HSMCR30P0CW71 290 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 GTF2E2P29084 291 aaKnown RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 ERP29P30040 261 aaKnown RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 MLLT3P42568 568 aaPredicted RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 CDKN2CP42773 168 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 ARPP19P56211 112 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 SNRPGP62308 76 aaKnown RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 RPS24P62847 133 aaKnown RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 ARF5P84085 180 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 CD300CQ08708 224 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 ASAH1Q13510 395 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 CDH18Q13634 790 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 VEPH1Q14D04 833 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 NDUFA9Q16795 377 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 UGT8Q16880 541 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 ATAD3CQ5T2N8 411 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 PDZK1Q5T2W1 519 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 DLK2Q6UY11 383 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 TPRG1Q6ZUI0 275 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 VTCN1Q7Z7D3 282 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 GALNT12Q8IXK2 581 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 KLHDC8AQ8IYD2 350 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 CLDN22Q8N7P3 220 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 OR6F1Q8NGZ6 308 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 GOT1L1Q8NHS2 421 aaPredicted RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 WDR36Q8NI36 951 aaKnown RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 PPP1R13LQ8WUF5 828 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 SKA2Q8WVK7 121 aaPredicted RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 MTFMTQ96DP5 389 aaKnown RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 RIPOR3Q96MK2 946 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 FOPNLQ96NB1 174 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 TMEM175Q9BSA9 504 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 ZBED2Q9BTP6 218 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 PRRG3Q9BZD7 231 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 TMEM161AQ9NX61 479 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 STOML2Q9UJZ1 356 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 LSM7Q9UK45 103 aaKnown RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 PRG3Q9Y2Y8 225 aaPredicted RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 RBMX2Q9Y388 322 aaKnown RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 CMAHPQ9Y471 501 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 SCN8AQ9UQD0 1980 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 SCN10AQ9Y5Y9 1956 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 RGS5O15539 181 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 HCN1O60741 890 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 ALX3O95076 343 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 GADD45GO95257 159 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 CATP04040 527 aaKnown RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 IFNW1P05000 195 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 TCEA1P23193 301 aaKnown RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 IL12RB1P42701 662 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 HMGA2P52926 109 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 FAM189BP81408 668 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 GPR50Q13585 617 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 QPRTQ15274 297 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 CHRNA6Q15825 494 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 TSTQ16762 297 aaKnown RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 PTCHD3Q3KNS1 767 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 FAM219BQ5XKK7 198 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 HIST2H2AA3Q6FI13 130 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 METAP1DQ6UB28 335 aaPredicted RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 CXCL17Q6UXB2 119 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 CASP12Q6UXS9 341 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 PLCZ1Q86YW0 608 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 SNX29P2Q8IUI4 249 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 BBS7Q8IWZ6 715 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 SLC7A5P1Q8MH63 180 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 CACTIN-AS1Q8N1I8 211 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 FAM83FQ8NEG4 500 aaPredicted RBP5.9□□□□□ -1.47
HERC4-209ENST00000473533 OR4A15Q8NGL6 344 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 ASZ1Q8WWH4 475 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 UBE2E3Q969T4 207 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 COQ8BQ96D53 544 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 APIPQ96GX9 242 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 TMEM80Q96HE8 168 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 VPS35Q96QK1 796 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 BBS2Q9BXC9 721 aa5.9□□□□□ -1.47
HERC4-209ENST00000473533 ASPNQ9BXN1 380 aa5.9□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms