RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 NME7Q9Y5B8 376 aa4.8□□□□□ -1.64
CCDC39-202ENST00000471307 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.8□□□□□ -1.64
CCDC39-202ENST00000471307 ZNFX1Q9P2E3 1918 aaKnown RBP4.8□□□□□ -1.64
CCDC39-202ENST00000471307 STAM2O75886 525 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 TRIM49P0CI25 452 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 TRIM49CP0CI26 452 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 ALOX12P18054 663 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 ZNF10P21506 573 aaPredicted RBP4.79□□□□□ -1.64
CCDC39-202ENST00000471307 MAPK4P31152 587 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 PRPHP41219 470 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 GARSP41250 739 aaKnown RBP4.79□□□□□ -1.64
CCDC39-202ENST00000471307 UBE2HP62256 183 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 RPS6P62753 249 aaKnown RBP4.79□□□□□ -1.64
CCDC39-202ENST00000471307 SIRPAP78324 504 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 CX3CL1P78423 397 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 BAATQ14032 418 aaPredicted RBP4.79□□□□□ -1.64
CCDC39-202ENST00000471307 PDIA5Q14554 519 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 LETM2Q2VYF4 491 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 SPECC1Q5M775 1068 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 C16orf54Q6UWD8 224 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 NIPA1Q7RTP0 329 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 ANKRD13CQ8N6S4 541 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 C4orf32Q8N8J7 132 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 RSRC1Q96IZ7 334 aaKnown RBP4.79□□□□□ -1.64
CCDC39-202ENST00000471307 CAPNS2Q96L46 248 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 MBOAT7Q96N66 472 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 IWS1Q96ST2 819 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 BTBD10Q9BSF8 475 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 C16orf70Q9BSU1 422 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 CABLES2Q9BTV7 478 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 PPIL3Q9H2H8 161 aaKnown RBP4.79□□□□□ -1.64
CCDC39-202ENST00000471307 RNF186Q9NXI6 227 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 CYP39A1Q9NYL5 469 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 LARSQ9P2J5 1176 aaKnown RBP4.79□□□□□ -1.64
CCDC39-202ENST00000471307 RHCGQ9UBD6 479 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 ADD3Q9UEY8 706 aaKnown RBP4.79□□□□□ -1.64
CCDC39-202ENST00000471307 MYH7BA7E2Y1 1941 aa4.79□□□□□ -1.64
CCDC39-202ENST00000471307 FRMPD4Q14CM0 1322 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 A0A0G2JMZ2 1700 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 GAPDHSO14556 408 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-202ENST00000471307 NEMFO60524 1076 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 PLOD3O60568 738 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 SORBS2O94875 1100 aaKnown RBP4.78□□□□□ -1.64
CCDC39-202ENST00000471307 MBD3O95983 291 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 CA4P22748 312 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 CMA1P23946 247 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 MARCKSP29966 332 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-202ENST00000471307 CCND2P30279 289 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 LONP1P36776 959 aaKnown RBP4.78□□□□□ -1.64
CCDC39-202ENST00000471307 SUOXP51687 545 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 MFAP4P55083 255 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 CEP55Q53EZ4 464 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 HAUS6Q7Z4H7 955 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 PIGZQ86VD9 579 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 SAT2Q96F10 170 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-202ENST00000471307 FAM20AQ96MK3 541 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 AGAP3Q96P47 875 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 MTMR9Q96QG7 549 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 TAAR1Q96RJ0 339 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 ANP32EQ9BTT0 268 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 RAB34Q9BZG1 259 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 FTOQ9C0B1 505 aaKnown RBP eCLIP4.78□□□□□ -1.64
CCDC39-202ENST00000471307 PXMP2Q9NR77 195 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 ZNF701Q9NV72 531 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-202ENST00000471307 ASIC3Q9UHC3 531 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 DDX25Q9UHL0 483 aaKnown RBP4.78□□□□□ -1.64
CCDC39-202ENST00000471307 GPR34Q9UPC5 381 aa4.78□□□□□ -1.64
CCDC39-202ENST00000471307 IGLV3-22A0A075B6J6 115 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 SLC15A5A6NIM6 579 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 ASB14A6NK59 587 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 PTGES3LE9PB15 166 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 FAM86B1E9PN63 330 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 PTP4A3O75365 173 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 TDP2O95551 362 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 FAM86B2P0C5J1 330 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 OR52Z1P0C646 297 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 CALRP27797 417 aaKnown RBP4.77□□□□□ -1.65
CCDC39-202ENST00000471307 PDX1P52945 283 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 PNLIPRP2P54317 469 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 KRTAP10-3P60369 221 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 CDK3Q00526 305 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 CNTN2Q02246 1040 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 SP3Q02447 781 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 STXBP2Q15833 593 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 TMEM266Q2M3C6 531 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 SGSM1Q2NKQ1 1148 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 KLHL40Q2TBA0 621 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 PLEKHS1Q5SXH7 462 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 GPR142Q7Z601 462 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 MAPKAPK5-AS1Q8N8E1 139 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 FAM133AQ8N9E0 248 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 TRIML1Q8N9V2 468 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 OR5AP2Q8NGF4 316 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 OLIG1Q8TAK6 271 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 FAM222BQ8WU58 562 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 MRPS27Q92552 414 aaKnown RBP4.77□□□□□ -1.65
CCDC39-202ENST00000471307 CDHR1Q96JP9 859 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 AK8Q96MA6 479 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 KRT12Q99456 494 aa4.77□□□□□ -1.65
CCDC39-202ENST00000471307 RIT2Q99578 217 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms