RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PKP4Q99569 1192 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 LRMDAQ9H2I8 198 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 CDH20Q9HBT6 801 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 TCP11L1Q9NUJ3 509 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 RMND1Q9NWS8 449 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 TMEM161AQ9NX61 479 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 FETUBQ9UGM5 382 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 MAD2L2Q9UI95 211 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 FBXW2Q9UKT8 454 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 YIPF1Q9Y548 306 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 ECM29Q5VYK3 1845 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 PHLPP2Q6ZVD8 1323 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 CACNA1SQ13698 1873 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 ROBO3Q96MS0 1386 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 A0A1W2PP11 408 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 SMCO2A6NFE2 343 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 C15orf62A8K5M9 175 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 PP2D1A8MPX8 630 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 NTN3O00634 580 aaPredicted RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 CYTH3O43739 400 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 STAM2O75886 525 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 BCAS2O75934 225 aaPredicted RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 AKAP3O75969 853 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 GH1P01241 217 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 PRSS2P07478 247 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 SMIM18P0DKX4 95 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 DESP17661 470 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 CD27P26842 260 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 PSMB4P28070 264 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 C21orf33P30042 268 aaPredicted RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 CCND3P30281 292 aaPredicted RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 CASQ1P31415 396 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 TIA1P31483 386 aaKnown RBP eCLIP3.89□□□□□ -1.79
VPS29-202ENST00000447578 LONP1P36776 959 aaKnown RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 CCT6AP40227 531 aaKnown RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 PSMC4P43686 418 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 RGS7P49802 495 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 GMPSP49915 693 aaPredicted RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 NAPAP54920 295 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 GNG11P61952 73 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 DLK1P80370 383 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 EEF1A2Q05639 463 aaKnown RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 KIF5AQ12840 1032 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 KARSQ15046 597 aaKnown RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 SGCBQ16585 318 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 HFEQ30201 348 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 FAM174BQ3ZCQ3 159 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 SETMARQ53H47 684 aaPredicted RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 ZNF789Q5FWF6 425 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 OTUD3Q5T2D3 398 aaPredicted RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 ZNF658Q5TYW1 1059 aaPredicted RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 C9orf57Q5W0N0 161 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 TXNRD3NBQ6F5E7 133 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 ETFRF1Q6IPR1 90 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 GALNT17Q6IS24 598 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 FBXL22Q6P050 247 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 SPSB3Q6PJ21 355 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 NRARPQ7Z6K4 114 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 TMPRSS11BQ86T26 416 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 TMEM139Q8IV31 216 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 FAM114A1Q8IWE2 563 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 SFRP1Q8N474 314 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 TEX9Q8N6V9 391 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 C4orf32Q8N8J7 132 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 RTL3Q8N8U3 475 aaKnown RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 MNS1Q8NEH6 495 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 ZNF397Q8NF99 534 aaPredicted RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 NEK11Q8NG66 645 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 OR52I2Q8NH67 350 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 NELFBQ8WX92 580 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 RIT1Q92963 219 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 SPATA33Q96N06 139 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 GAL3ST4Q96RP7 486 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 CSF3RQ99062 836 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 LZTS2Q9BRK4 669 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 SPXQ9BT56 116 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 SPRY4Q9C004 299 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 SNX25Q9H3E2 840 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 CPVLQ9H3G5 476 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 AKIRIN1Q9H9L7 192 aaPredicted RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 LMAN1LQ9HAT1 526 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 PCDH9Q9HC56 1237 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 VAT1LQ9HCJ6 419 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 COMMD8Q9NX08 183 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 MIOSQ9NXC5 875 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 RWDD2AQ9UIY3 292 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 AGTPBP1Q9UPW5 1226 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 CHKBQ9Y259 395 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 ITM2BQ9Y287 266 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 PPP2R2CQ9Y2T4 447 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 ZNF831Q5JPB2 1677 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 TNRC6CQ9HCJ0 1690 aaKnown RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 MYO5AQ9Y4I1 1855 aaKnown RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 COL24A1Q17RW2 1714 aa3.89□□□□□ -1.79
VPS29-202ENST00000447578 MYH14Q7Z406 1995 aaKnown RBP3.89□□□□□ -1.79
VPS29-202ENST00000447578 TRIM49BA6NDI0 452 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 LAD1O00515 517 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 DVL1O14640 695 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 PPIP5K2O43314 1243 aa3.88□□□□□ -1.79
VPS29-202ENST00000447578 VEGFDO43915 354 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms