RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 LOC102723996A0A087X1L8 192 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 UQCRHLA0A096LP55 91 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 OR5H15A6NDH6 313 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 A8MUI8 341 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 HAT1O14929 419 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 SLC19A2O60779 497 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 PRAMEF2O60811 474 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 NDUFS3O75489 264 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 WFS1O76024 890 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 RPN2P04844 631 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 HEXBP07686 556 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 COX6B1P14854 86 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 H2AFXP16104 143 aaPredicted RBP12.2□□□□□ -0.46
LINC00339-202ENST00000416769 HSD17B3P37058 310 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 SLC26A3P40879 764 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 HSF1Q00613 529 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 ILF2Q12905 390 aaKnown RBP12.2□□□□□ -0.46
LINC00339-202ENST00000416769 CTBP1Q13363 440 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 UAP1Q16222 522 aaPredicted RBP12.2□□□□□ -0.46
LINC00339-202ENST00000416769 TYSND1Q2T9J0 566 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 KBTBD12Q3ZCT8 623 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 ACSBG2Q5FVE4 666 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 UBAP2Q5T6F2 1119 aaKnown RBP12.2□□□□□ -0.46
LINC00339-202ENST00000416769 RNF187Q5TA31 235 aaPredicted RBP12.2□□□□□ -0.46
LINC00339-202ENST00000416769 C3P1Q6ZMU1 363 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 BEST3Q8N1M1 668 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 ADAMTS18Q8TE60 1221 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 CCDC138Q96M89 665 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 BIRC8Q96P09 236 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 SIGLEC12Q96PQ1 595 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 OR2A5Q96R48 311 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 SLC30A3Q99726 388 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 CCDC77Q9BR77 488 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 PLCD4Q9BRC7 762 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 ZNF700Q9H0M5 742 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 KLHL1Q9NR64 748 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 SMYD2Q9NRG4 433 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 RIC8BQ9NVN3 520 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 INTS10Q9NVR2 710 aaKnown RBP12.2□□□□□ -0.46
LINC00339-202ENST00000416769 ZFATQ9P243 1243 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 SUCOQ9UBS9 1254 aaKnown RBP12.2□□□□□ -0.46
LINC00339-202ENST00000416769 TAC3Q9UHF0 121 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 MKL2Q9ULH7 1088 aa12.2□□□□□ -0.46
LINC00339-202ENST00000416769 CXorf49A8MYA2 514 aaPredicted RBP12.19□□□□□ -0.46
LINC00339-202ENST00000416769 FAM227AF5H4B4 570 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 HAUS5O94927 633 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 AHSGP02765 367 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 CXCR2P25025 360 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 FMO4P31512 558 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 ADARP55265 1226 aaKnown RBP12.19□□□□□ -0.46
LINC00339-202ENST00000416769 GBX1Q14549 363 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 INAQ16352 499 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 KLHL38Q2WGJ6 581 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 ZNF470Q6ECI4 717 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 ZNF425Q6IV72 752 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 TMEM205Q6UW68 189 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 OTOAQ7RTW8 1153 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 LRRC6Q86X45 466 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 DENND6AQ8IWF6 608 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 CTAGE3PQ8IX95 158 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 OTUD6BQ8N6M0 293 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 OR9A4Q8NGU2 314 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 PKP4Q99569 1192 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 CPNE1Q99829 537 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 RAB11FIP5Q9BXF6 653 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 RBCK1Q9BYM8 510 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 VN1R1Q9GZP7 353 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 MRPS30Q9NP92 439 aaKnown RBP12.19□□□□□ -0.46
LINC00339-202ENST00000416769 FETUBQ9UGM5 382 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 GNPTGQ9UJJ9 305 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 SH2B3Q9UQQ2 575 aa12.19□□□□□ -0.46
LINC00339-202ENST00000416769 MATN4O95460 622 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 NUDT17P0C025 328 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 ERGP11308 486 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 RPS3P23396 243 aaKnown RBP eCLIP12.18□□□□□ -0.46
LINC00339-202ENST00000416769 GABRB3P28472 473 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 CMPK1P30085 196 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 PTGER4P35408 488 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 SLC1A2P43004 574 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 ZNF766Q5HY98 468 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 GRTP1Q5TC63 336 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 ABHD17BQ5VST6 288 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 STRA8Q7Z7C7 330 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 CHERPQ8IWX8 916 aaKnown RBP12.18□□□□□ -0.46
LINC00339-202ENST00000416769 CNPY4Q8N129 248 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 PPM1NQ8N819 430 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 GIMAP7Q8NHV1 300 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 UHMK1Q8TAS1 419 aaKnown RBP12.18□□□□□ -0.46
LINC00339-202ENST00000416769 LPGAT1Q92604 370 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 VPS50Q96JG6 964 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 TSSK1BQ9BXA7 367 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 PPCSQ9HAB8 311 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 FBXO6Q9NRD1 293 aaPredicted RBP12.18□□□□□ -0.46
LINC00339-202ENST00000416769 STMN3Q9NZ72 180 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 SPATA7Q9P0W8 599 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 HCN3Q9P1Z3 774 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 AKAP6Q13023 2319 aa12.18□□□□□ -0.46
LINC00339-202ENST00000416769 INTS1Q8N201 2190 aaKnown RBP12.18□□□□□ -0.46
LINC00339-202ENST00000416769 NPIPA5E9PKD4 350 aa12.17□□□□□ -0.46
LINC00339-202ENST00000416769 F8W8V4 182 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms