RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 FABP3P05413 133 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 IL7P13232 177 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 EPHB3P54753 998 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 FOXM1Q08050 763 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 FCHO2Q0JRZ9 810 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 NPRL3Q12980 569 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 IRF3Q14653 427 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 KIAA1614Q5VZ46 1190 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 EIF3MQ7L2H7 374 aaKnown RBP12.52□□□□□ -0.4
PTPRN-202ENST00000409251 BBS7Q8IWZ6 715 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 YIPF7Q8N8F6 280 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF548Q8NEK5 533 aaPredicted RBP12.52□□□□□ -0.4
PTPRN-202ENST00000409251 SORCS1Q8WY21 1168 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 YIPF6Q96EC8 236 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 ASB2Q96Q27 587 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 SLC25A51Q9H1U9 297 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 MS4A12Q9NXJ0 267 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 NLKQ9UBE8 527 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 PRKAG2Q9UGJ0 569 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 HCFC2Q9Y5Z7 792 aa12.52□□□□□ -0.4
PTPRN-202ENST00000409251 TMEM189-UBE2V1I3L0A0 370 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 VPS4BO75351 444 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 OR2B3O76000 313 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 TOXO94900 526 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 EPN2O95208 641 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 SOD2P04179 222 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 C8AP07357 584 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 CYP2A7P20853 494 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 CSKP41240 450 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 CDKN2CP42773 168 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 SMSP52788 366 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 ERVFC1P60507 584 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 RHOAP61586 193 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 MSANTD2Q6P1R3 559 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 C19orf18Q8NEA5 215 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 HSH2DQ96JZ2 352 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 ASPNQ9BXN1 380 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 HDHD5Q9BXW7 423 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 MUC13Q9H3R2 512 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 SLC25A37Q9NYZ2 338 aa12.52□□□□□ -0.41
PTPRN-202ENST00000409251 FAM240BA0A1B0GVZ2 78 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 FABP12A6NFH5 140 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 KERAO60938 352 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 SLC19A1P41440 591 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 SPIBQ01892 262 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 CSTF3Q12996 717 aaKnown RBP12.51□□□□□ -0.41
PTPRN-202ENST00000409251 USP39Q53GS9 565 aaKnown RBP12.51□□□□□ -0.41
PTPRN-202ENST00000409251 CPZQ66K79 652 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 BCDIN3DQ7Z5W3 292 aaKnown RBP12.51□□□□□ -0.41
PTPRN-202ENST00000409251 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.51□□□□□ -0.41
PTPRN-202ENST00000409251 VWCEQ96DN2 955 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 FEVQ99581 238 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 ELAC1Q9H777 363 aaKnown RBP12.51□□□□□ -0.41
PTPRN-202ENST00000409251 TMEM248Q9NWD8 314 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 GPRC5BQ9NZH0 403 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 PCTPQ9UKL6 214 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 SLC6A14Q9UN76 642 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 INSL5Q9Y5Q6 135 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 PABPN1LA6NDY0 278 aaKnown RBP12.51□□□□□ -0.41
PTPRN-202ENST00000409251 GFRA2O00451 464 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 STX7O15400 261 aaKnown RBP12.51□□□□□ -0.41
PTPRN-202ENST00000409251 LRRTM2O43300 516 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 TPST2O60704 377 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 PEX11BO96011 259 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 FCER2P06734 321 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 CTNNB1P35222 781 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 MAGEA11P43364 429 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 GBX1Q14549 363 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 SYT6Q5T7P8 510 aaPredicted RBP12.51□□□□□ -0.41
PTPRN-202ENST00000409251 TRIQKQ629K1 86 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 ASB18Q6ZVZ8 466 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 CNTN4Q8IWV2 1026 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 ZFP41Q8N8Y5 198 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 SELENOMQ8WWX9 145 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 NELL1Q92832 810 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 OLA1Q9NTK5 396 aaKnown RBP12.51□□□□□ -0.41
PTPRN-202ENST00000409251 SIRT5Q9NXA8 310 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 ZNF45Q02386 682 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 GTF2H2Q13888 395 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 PSAPL1Q6NUJ1 521 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 GTF2H2CQ6P1K8 395 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 CNKSR3Q6P9H4 555 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 GAREM2Q75VX8 874 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 PIANPQ8IYJ0 282 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 C7orf61Q8IZ16 206 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 TMEM132CQ8N3T6 1108 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 ST6GAL2Q96JF0 529 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 ELOVL6Q9H5J4 265 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 SH3BP4Q9P0V3 963 aa12.51□□□□□ -0.41
PTPRN-202ENST00000409251 SLC7A4O43246 635 aa12.5□□□□□ -0.41
PTPRN-202ENST00000409251 GNRH1P01148 92 aa12.5□□□□□ -0.41
PTPRN-202ENST00000409251 MMP2P08253 660 aa12.5□□□□□ -0.41
PTPRN-202ENST00000409251 NUDT7P0C024 238 aa12.5□□□□□ -0.41
PTPRN-202ENST00000409251 MC4RP32245 332 aa12.5□□□□□ -0.41
PTPRN-202ENST00000409251 SLC14A1Q13336 389 aa12.5□□□□□ -0.41
PTPRN-202ENST00000409251 EIF4EBP2Q13542 120 aaPredicted RBP12.5□□□□□ -0.41
PTPRN-202ENST00000409251 POU4F3Q15319 338 aa12.5□□□□□ -0.41
PTPRN-202ENST00000409251 LIPKQ5VXJ0 399 aa12.5□□□□□ -0.41
PTPRN-202ENST00000409251 LRRC66Q68CR7 880 aa12.5□□□□□ -0.41
PTPRN-202ENST00000409251 SLC8B1Q6J4K2 584 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms