RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SCAMP4Q969E2 229 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 CIDECQ96AQ7 238 aaPredicted RBP20.2■□□□□ 0.82
CTCF-202ENST00000401394 CDK5RAP1Q96SZ6 601 aaKnown RBP20.2■□□□□ 0.82
CTCF-202ENST00000401394 CEP44Q9C0F1 390 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 PCDHGA2Q9Y5H1 932 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 IDH3BO43837 385 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 INO80DQ53TQ3 878 aaPredicted RBP20.2■□□□□ 0.82
CTCF-202ENST00000401394 C10orf62Q5T681 223 aaPredicted RBP20.2■□□□□ 0.82
CTCF-202ENST00000401394 ZNF605Q86T29 641 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 MMAAQ8IVH4 418 aaKnown RBP20.2■□□□□ 0.82
CTCF-202ENST00000401394 HS6ST3Q8IZP7 471 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 SYNPOQ8N3V7 929 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 CELF5Q8N6W0 485 aaKnown RBP20.2■□□□□ 0.82
CTCF-202ENST00000401394 OR6F1Q8NGZ6 308 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 IPCEF1Q8WWN9 437 aaPredicted RBP20.2■□□□□ 0.82
CTCF-202ENST00000401394 EFHD2Q96C19 240 aaPredicted RBP20.2■□□□□ 0.82
CTCF-202ENST00000401394 CMTM7Q96FZ5 175 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 BCL7BQ9BQE9 202 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 LINC00597Q9H2U6 94 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 DUSP12Q9UNI6 340 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 PDZK1P1A8MUH7 402 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 ARHGAP33O14559 1287 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 HOXC11O43248 304 aaPredicted RBP20.19■□□□□ 0.82
CTCF-202ENST00000401394 CKBP12277 381 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 ELNP15502 786 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 LHCGRP22888 699 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 TNFSF8P32971 234 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 XKR6Q5GH73 641 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 DGKKQ5KSL6 1271 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 OTOP2Q7RTS6 562 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 HMGN2P46Q86SG4 172 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 LAX1Q8IWV1 398 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 TRNT1Q96Q11 434 aaKnown RBP20.19■□□□□ 0.82
CTCF-202ENST00000401394 C11orf16Q9NQ32 467 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 ASIC5Q9NY37 505 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 ERVW-1Q9UQF0 538 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 MAP4K5Q9Y4K4 846 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 HSPE1-MOB4S4R3N1 261 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 TET1Q8NFU7 2136 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 ZW10O43264 779 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 APOL3O95236 402 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 CSF2P04141 144 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 PRPS2P11908 318 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 IL1RNP18510 177 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 RPS19P39019 145 aaKnown RBP20.19■□□□□ 0.82
CTCF-202ENST00000401394 BCL2L1Q07817 233 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 CDH18Q13634 790 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 RGNQ15493 299 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 TBCEQ15813 527 aaPredicted RBP20.19■□□□□ 0.82
CTCF-202ENST00000401394 FYTTD1Q96QD9 318 aaKnown RBP20.19■□□□□ 0.82
CTCF-202ENST00000401394 DUSP26Q9BV47 211 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 TBC1D14Q9P2M4 693 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 CXCR2P25025 360 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 SMAD3P84022 425 aaKnown RBP20.19■□□□□ 0.82
CTCF-202ENST00000401394 IRF8Q02556 426 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 CRTC1Q6UUV9 634 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 GLCCI1Q86VQ1 547 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 NLRP8Q86W28 1048 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 TMEM203Q969S6 136 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 Q9Y3F1 56 aa20.19■□□□□ 0.82
CTCF-202ENST00000401394 AOC2O75106 756 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 SEMA3DO95025 777 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 PFN3P60673 137 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 TRIM71Q2Q1W2 868 aaKnown RBP20.18■□□□□ 0.82
CTCF-202ENST00000401394 Q5BKY6 102 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 SPANXN2Q5MJ10 180 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 WDR36Q8NI36 951 aaKnown RBP20.18■□□□□ 0.82
CTCF-202ENST00000401394 NFKBIDQ8NI38 313 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 MGLLQ99685 303 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 SNTG1Q9NSN8 517 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 POM121L1PQ3SYA9 428 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 SNAP47Q5SQN1 464 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 AGAP6Q5VW22 663 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 CCDC80Q76M96 950 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 AGAP4Q96P64 663 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 IMPAD1Q9NX62 359 aa20.18■□□□□ 0.82
CTCF-202ENST00000401394 PRAMEF33A0A0G2JMD5 474 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 TAF4O00268 1085 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 KPNA5O15131 536 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 PRAMEF10O60809 474 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 ADAMTS4O75173 837 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 MED26O95402 600 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 KRT8P05787 483 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 HMGA1P17096 107 aaKnown RBP20.17■□□□□ 0.82
CTCF-202ENST00000401394 GABRB1P18505 474 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 RPS3P23396 243 aaKnown RBP eCLIP20.17■□□□□ 0.82
CTCF-202ENST00000401394 HTR3AP46098 478 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 RFX2P48378 723 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 RPS26P62854 115 aaKnown RBP20.17■□□□□ 0.82
CTCF-202ENST00000401394 TUBA1BP68363 451 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 RAE1P78406 368 aaKnown RBP20.17■□□□□ 0.82
CTCF-202ENST00000401394 MEF2AQ02078 507 aaPredicted RBP20.17■□□□□ 0.82
CTCF-202ENST00000401394 MTAPQ13126 283 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 PTGES3Q15185 160 aaKnown RBP20.17■□□□□ 0.82
CTCF-202ENST00000401394 PRSS53Q2L4Q9 553 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 MACC1Q6ZN28 852 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 TUBA1AQ71U36 451 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 MEX3DQ86XN8 651 aaKnown RBP20.17■□□□□ 0.82
CTCF-202ENST00000401394 FBXO22Q8NEZ5 403 aa20.17■□□□□ 0.82
CTCF-202ENST00000401394 OR2A14Q96R47 310 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms