RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 EYSQ5T1H1 3165 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 BCKDKO14874 412 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 GSTM2P28161 218 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 ACADLP28330 430 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 FMO3P31513 532 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 GP2P55259 537 aaKnown RBP12.86□□□□□ -0.35
CCDC3-202ENST00000378839 BNIP3Q12983 259 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 AQP6Q13520 282 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 STARD3Q14849 445 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 FAM78AQ5JUQ0 283 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 SLC16A12Q6ZSM3 486 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 EIF3MQ7L2H7 374 aaKnown RBP12.86□□□□□ -0.35
CCDC3-202ENST00000378839 COMMD6Q7Z4G1 85 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 B3GNT8Q7Z7M8 397 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 PIK3C3Q8NEB9 887 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 TBC1D20Q96BZ9 403 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 DTNBP1Q96EV8 351 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 TPD52L3Q96J77 140 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 TUBA1CQ9BQE3 449 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 ZDHHC5Q9C0B5 715 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 RIBC2Q9H4K1 309 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 TM9SF3Q9HD45 589 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 SH3BP4Q9P0V3 963 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 SLC23A2Q9UGH3 650 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 SLC27A6Q9Y2P4 619 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 DGKBQ9Y6T7 804 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 FABP3P05413 133 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 ITGAMP11215 1152 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 IMPDH2P12268 514 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 HTR1BP28222 390 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 ZNF33BQ06732 778 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 CBX3Q13185 183 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 RAET1GQ6H3X3 334 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 MED27Q6P2C8 311 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 FAM124AQ86V42 546 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 NPAS3Q8IXF0 933 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 ZNF557Q8N988 423 aaPredicted RBP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 NUS1Q96E22 293 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 MAGEB10Q96LZ2 347 aaPredicted RBP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 DMRT3Q9NQL9 472 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 RAD18Q9NS91 495 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 PDP1Q9P0J1 537 aaPredicted RBP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 RAPGEFL1Q9UHV5 662 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 BTNL2Q9UIR0 455 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 C3orf18Q9UK00 162 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 FAF1Q9UNN5 650 aaPredicted RBP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 NAALAD2Q9Y3Q0 740 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 KCNE2Q9Y6J6 123 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 COL4A3Q01955 1670 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 USP34Q70CQ2 3546 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 GNG14A0A1W2PPG7 69 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 PIPSLA2A3N6 862 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 TTC36A6NLP5 189 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 POP7O75817 140 aaKnown RBP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 OPN1SWP03999 348 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 INHBBP09529 407 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 ETFAP13804 333 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 ADRB3P13945 408 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 HSD3B1P14060 373 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 HSD3B2P26439 372 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 RYKP34925 604 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 NFATC3Q12968 1075 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 CYP27C1Q4G0S4 372 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 Q6ZPB1 254 aaPredicted RBP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 CELF5Q8N6W0 485 aaKnown RBP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 WDR34Q96EX3 536 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 ZNF451Q9Y4E5 1061 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 E9PQ18 207 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 QSOX1O00391 747 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 HNRNPA1P09651 372 aaKnown RBP eCLIP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 ITGB7P26010 798 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 IL1RL1Q01638 556 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 DCTN2Q13561 401 aaKnown RBP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 HNRNPA1L2Q32P51 320 aaKnown RBP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 FNDC3BQ53EP0 1204 aaKnown RBP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 ZC3H12BQ5HYM0 836 aaKnown RBP12.85□□□□□ -0.35
CCDC3-202ENST00000378839 GALNT18Q6P9A2 607 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 KLHL35Q6PF15 583 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 TMC5Q6UXY8 1006 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 FKBP9P1Q75LS8 142 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 UTS2BQ765I0 119 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 LAS2Q8IYD9 372 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 OR4A15Q8NGL6 344 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 LGR4Q9BXB1 951 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 DGCR6LQ9BY27 220 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 EPHX3Q9H6B9 360 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 ERVK-18Q9QC07 812 aa12.85□□□□□ -0.35
CCDC3-202ENST00000378839 PLXND1Q9Y4D7 1925 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 PSMD11O00231 422 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 C6orf47O95873 294 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 C1GALT1C1LP0DN25 315 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 GPR1P46091 355 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 ZNF234Q14588 700 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 FBXO15Q8NCQ5 510 aaPredicted RBP12.84□□□□□ -0.35
CCDC3-202ENST00000378839 OR5AR1Q8NGP9 310 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 OR9A1PQ8NGU1 263 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 MUL1Q969V5 352 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 RSPO3Q9BXY4 272 aaPredicted RBP12.84□□□□□ -0.35
CCDC3-202ENST00000378839 ASPSCR1Q9BZE9 553 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 TRIT1Q9H3H1 467 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms