RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ROGDIQ9GZN7 287 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 C3orf14Q9HBI5 128 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 CORO2BQ9UQ03 480 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 PCDHGB2Q9Y5G2 931 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 CENPXA8MT69 81 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 M0R129 80 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 UGT2B17O75795 530 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 SEMA3DO95025 777 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 TRBC1P01850 177 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 SPAM1P38567 509 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 CRHR2Q13324 411 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 MICAQ29983 383 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 GPR33Q49SQ1 333 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 RSPO2Q6UXX9 243 aaPredicted RBP20.37■□□□□ 0.85
UPF3A-202ENST00000375299 OR52J3Q8NH60 311 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 TSEN34Q9BSV6 310 aaKnown RBP20.37■□□□□ 0.85
UPF3A-202ENST00000375299 DUSP26Q9BV47 211 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 DYRK4Q9NR20 520 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 GABRQQ9UN88 632 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 ALPK3Q96L96 1907 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 C1orf226A1L170 272 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 GCM2O75603 506 aaPredicted RBP20.36■□□□□ 0.85
UPF3A-202ENST00000375299 STC2O76061 302 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 EOMESO95936 686 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 ATF6P18850 670 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 TNFRSF1BP20333 461 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 PPIBP23284 216 aaKnown RBP20.36■□□□□ 0.85
UPF3A-202ENST00000375299 CDH12P55289 794 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 AP1S1P61966 158 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 KHDRBS1Q07666 443 aaKnown RBP eCLIP20.36■□□□□ 0.85
UPF3A-202ENST00000375299 CAMK2BQ13554 666 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 RGNQ15493 299 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 TEAD4Q15561 434 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 EXOC3L2Q2M3D2 409 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 RAB43Q86YS6 212 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 OR6K2Q8NGY2 324 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 TRNT1Q96Q11 434 aaKnown RBP20.36■□□□□ 0.85
UPF3A-202ENST00000375299 C19orf43Q9BQ61 176 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 TTLL2Q9BWV7 592 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 SLC12A9Q9BXP2 914 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 EFCAB10A6NFE3 127 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 ARHGAP33O14559 1287 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 HIST1H2AGP0C0S8 130 aaPredicted RBP20.36■□□□□ 0.85
UPF3A-202ENST00000375299 HLA-EP13747 358 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 HIST1H2ADP20671 130 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 NSG1P42857 185 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 C21orf58P58505 322 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 DMC1Q14565 340 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 CDKN3Q16667 212 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 CCSAPQ6IQ19 270 aaPredicted RBP20.36■□□□□ 0.85
UPF3A-202ENST00000375299 HIST1H2AHQ96KK5 128 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 DEPDC7Q96QD5 511 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 HIST1H2AJQ99878 128 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 H2AFJQ9BTM1 129 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 GPR62Q9BZJ7 368 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 TM6SF2Q9BZW4 377 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 ARHGAP39Q9C0H5 1083 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 GKN1Q9NS71 199 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 SLC22A14Q9Y267 594 aa20.36■□□□□ 0.85
UPF3A-202ENST00000375299 COCHO43405 550 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 GPX5O75715 221 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 ADRA2AP08913 450 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 JUPP14923 745 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 CCR7P32248 378 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 HNF4AP41235 474 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 RACK1P63244 317 aaKnown RBP20.35■□□□□ 0.85
UPF3A-202ENST00000375299 SSX1Q16384 188 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 GPR162Q16538 588 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 ADGRF1Q5T601 910 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 SLC24A5Q71RS6 500 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 RNF130Q86XS8 419 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 C11orf65Q8NCR3 313 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 PSD4Q8NDX1 1056 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 SIMC1Q8NDZ2 872 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 DNAJC11Q9NVH1 559 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 CNOT2Q9NZN8 540 aaKnown RBP20.35■□□□□ 0.85
UPF3A-202ENST00000375299 BTNL2Q9UIR0 455 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 A8MVJ9 347 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 SCAMP2O15127 329 aaKnown RBP20.35■□□□□ 0.85
UPF3A-202ENST00000375299 OPN1SWP03999 348 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 C8GP07360 202 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 IRF1P10914 325 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 ITPKAP23677 461 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 HNF1BP35680 557 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 RFX2P48378 723 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 HNMTP50135 292 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 CHIT1Q13231 466 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 GAB1Q13480 694 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 IFI44LQ53G44 452 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 ZNF783Q6ZMS7 281 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 GALNT12Q8IXK2 581 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 LINC01599Q8WXQ3 324 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 MCCC1Q96RQ3 725 aaPredicted RBP20.35■□□□□ 0.85
UPF3A-202ENST00000375299 TAPBPLQ9BX59 468 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 RNF38Q9H0F5 515 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 ASAH2Q9NR71 780 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 KLHL42Q9P2K6 505 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 SLC6A14Q9UN76 642 aa20.35■□□□□ 0.85
UPF3A-202ENST00000375299 RUVBL1Q9Y265 456 aaKnown RBP20.35■□□□□ 0.85
UPF3A-202ENST00000375299 A8MV72 311 aaPredicted RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms