RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 POT1Q9NUX5 634 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 VSX1Q9NZR4 365 aaPredicted RBP7.12□□□□□ -1.27
VPS13A-202ENST00000357409 GRHPRQ9UBQ7 328 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 CKLFQ9UBR5 152 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 SAMD4AQ9UPU9 718 aaKnown RBP7.12□□□□□ -1.27
VPS13A-202ENST00000357409 NDST2P52849 883 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 PRAMEF20Q5VT98 475 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 LHFPL3Q86UP9 236 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS13A-202ENST00000357409 LIPHQ8WWY8 451 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 Q96MT0 163 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 GMLQ99445 158 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 VPS29Q9UBQ0 182 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 HCN4Q9Y3Q4 1203 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 RWDD3Q9Y3V2 267 aa7.12□□□□□ -1.27
VPS13A-202ENST00000357409 FAM221BA6H8Z2 402 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 FABP12A6NFH5 140 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 SYN3O14994 580 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 B3GALT4O96024 378 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 IFNW1P05000 195 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 OR1D4P47884 311 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 ACTR3P61158 418 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 TRMT5Q32P41 509 aaKnown RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 DPY19L3Q6ZPD9 716 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 LRRC70Q7Z2Q7 622 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 TCEAL8Q8IYN2 117 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF619Q8N2I2 560 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 SLC25A44Q96H78 314 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 SATB2Q9UPW6 733 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 CAMK2AQ9UQM7 478 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 A0A1B0GVC2 190 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 A6NIN4 97 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 NPIPA2E9PIF3 369 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 NPIPA3F8WFD2 350 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 BCKDKO14874 412 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 IDO1P14902 403 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 HK1P19367 917 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 RPS15P62841 145 aaKnown RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF792Q3KQV3 632 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 EEF1A1P5Q5VTE0 462 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 FUKQ8N0W3 1084 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 CBR4Q8N4T8 237 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 OXSMQ9NWU1 459 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 GRHL1Q9NZI5 618 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 TLR6Q9Y2C9 796 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 PLLPQ9Y342 182 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 GABRDO14764 452 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 GABRA5P31644 462 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 GPD2P43304 727 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 PRKXP51817 358 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 MCCD1P59942 119 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 NFATC4Q14934 902 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 TMEM40Q8WWA1 233 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 RBM24Q9BX46 236 aaKnown RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 OR51I1Q9H343 314 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF446Q9NWS9 450 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 NUFIP1Q9UHK0 495 aaKnown RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 CDC14AQ9UNH5 594 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 SNX7Q9UNH6 387 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 CORO2BQ9UQ03 480 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 SALL3Q9BXA9 1300 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 A0A0X1KG70 313 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 POLR1CO15160 346 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 TMEM63AO94886 807 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 DLDP09622 509 aaKnown RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 FBLP22087 321 aaKnown RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 MAGEA11P43364 429 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 ABCA11PQ4W5N1 156 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 TRIM61Q5EBN2 209 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 KHDC1LQ5JSQ8 128 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 CATSPEREQ5SY80 951 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 FKBP1CQ5VVH2 108 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 MTFR2Q6P444 385 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 SLC9B2Q86UD5 537 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 LRRC18Q8N456 261 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 OR10T2Q8NGX3 314 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 SLAMF7Q9NQ25 335 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 RPH3ALQ9UNE2 315 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 CCNB2O95067 398 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 FGF19O95750 216 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 PTAFRP25105 342 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 GABRA2P47869 451 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 PRKAA2P54646 552 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 YBEYP58557 167 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 FKBP1AP62942 108 aaKnown RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 FAPQ12884 760 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF234Q14588 700 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 PLEKHS1Q5SXH7 462 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 OTPQ5XKR4 325 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 SYVN1Q86TM6 617 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 FAM160A2Q8N612 972 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 PIGXQ8TBF5 258 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 ARSGQ96EG1 525 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 NSUN3Q9H649 340 aaKnown RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 SYNPO2LQ9H987 977 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 DIABLOQ9NR28 239 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF701Q9NV72 531 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 RBM47A0AV96 593 aaKnown RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 MTRF1O75570 445 aaKnown RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms