RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 EIF2B3Q9NR50 452 aaKnown RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 SCHIP1Q9P0W5 487 aaPredicted RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 PAIP2BQ9ULR5 123 aaKnown RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 RPH3AQ9Y2J0 694 aaPredicted RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 APOC4-APOC2K7ER74 178 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 CBX7O95931 251 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 APOC2P02655 101 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 ALBP02768 609 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 SAGP10523 405 aaPredicted RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 SRCP12931 536 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 PGCP20142 388 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 MAGEA8P43361 318 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 ENTPD1P49961 510 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 HSPB3Q12988 150 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 RPA4Q13156 261 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 SERINC3Q13530 473 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 GFOD2Q3B7J2 385 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 SLC4A11Q8NBS3 891 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 NARS2Q96I59 477 aaKnown RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 ZNF160Q9HCG1 818 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 A0A087X1B8 175 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 ADAM12O43184 909 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 PPP1R11O60927 126 aaPredicted RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 MRPL33O75394 65 aaKnown RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 TIMP2P16035 220 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 EPHA3P29320 983 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 ACVRL1P37023 503 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 NCF4Q15080 339 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 SYT16Q17RD7 645 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 B3GNT6Q6ZMB0 384 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 C17orf107Q6ZR85 190 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 FAM26EQ8N5C1 309 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 NETO2Q8NC67 525 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 OR4K14Q8NGD5 310 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 CPNE2Q96FN4 548 aaPredicted RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 GORASP1Q9BQQ3 440 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 CHST8Q9H2A9 424 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 AVENQ9NQS1 362 aaPredicted RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 FBXO6Q9NRD1 293 aaPredicted RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 KCNS2Q9ULS6 477 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 KAT6AQ92794 2004 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 H3BQF6 201 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 KITP10721 976 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 ZNF35P13682 527 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 CNTFP26441 200 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 GGT2P36268 569 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 FLOT2Q14254 428 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 ISXQ2M1V0 245 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 ZNF630Q2M218 657 aaPredicted RBP8.1□□□□□ -1.11
HMGB1-203ENST00000341423 IER5LQ5T953 404 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 C1orf74Q96LT6 269 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 SMURF2Q9HAU4 748 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 CACNA1EQ15878 2313 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 TRIM64BA6NI03 449 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 HSPB2A8KAH6 182 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 NPHS1O60500 1241 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 CD3EP07766 207 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 GSK3BP49841 420 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 HSPB2Q16082 182 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 PAPD5Q8NDF8 572 aaKnown RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 NTAN1Q96AB6 310 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 VPS35Q96QK1 796 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 SLC6A17Q9H1V8 727 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 MRPL46Q9H2W6 279 aaKnown RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 DNAJB12Q9NXW2 375 aaKnown RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 EBF1Q9UH73 591 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 CRYBG1Q9Y4K1 1723 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 A0A1B0GX78 115 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 MEIS3P2A8K0S8 358 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 ANKRD66B4E2M5 251 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 GLRA3O75311 464 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 CST3P01034 146 aaPredicted RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 ADRB1P08588 477 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 PPP3CAQ08209 521 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 SLBPQ14493 270 aaKnown RBP eCLIP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 PFKFB4Q16877 469 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 PNCKQ6P2M8 343 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 UNQ9370/PRO34162Q6UXP9 181 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 KYQ8NBH2 561 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 TSEN2Q8NCE0 465 aaKnown RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 OR52K1Q8NGK4 314 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 PIH1D2Q8WWB5 315 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 ASB11Q8WXH4 323 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 BORCS8Q96FH0 119 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 SMAD5Q99717 465 aaKnown RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 SARGQ9BW04 601 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 L2HGDHQ9H9P8 463 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 ENOPH1Q9UHY7 261 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 FBXO5Q9UKT4 447 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 CHD8Q9HCK8 2581 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 NHSL1Q5SYE7 1610 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 IGHV1OR15-9A0A0B4J2B8 117 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 GPR171O14626 319 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 ZNF682O95780 498 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 ECDO95905 644 aaPredicted RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 ITIH2P19823 946 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 ADPRHP54922 357 aa8.09□□□□□ -1.11
HMGB1-203ENST00000341423 CYLC2Q14093 348 aaPredicted RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 SAMD4BQ5PRF9 694 aaKnown RBP8.09□□□□□ -1.11
HMGB1-203ENST00000341423 TXNRD3NBQ6F5E7 133 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms