RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 WASF3Q9UPY6 502 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 M0R2N6 131 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 TLX2O43763 284 aaPredicted RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 VNN1O95497 513 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 PRKACGP22612 351 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 TM4SF1P30408 202 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 CDH15P55291 814 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 ERVK-8P63133 956 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 CBLBQ13191 982 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 GOLGA7Q7Z5G4 137 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 MMABQ96EY8 250 aaPredicted RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 TFB2MQ9H5Q4 396 aaKnown RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 A0A1W2PPK0 400 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 HTR3EA5X5Y0 456 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 ZBTB48P10074 688 aaPredicted RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 CKMT2P17540 419 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 SNTA1Q13424 505 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 ZNF267Q14586 743 aaPredicted RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 LACTB2Q53H82 288 aaPredicted RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 PDSS1Q5T2R2 415 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 UBQLNLQ8IYU4 475 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 NKD2Q969F2 451 aaPredicted RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 S100PBPQ96BU1 408 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 SYT17Q9BSW7 474 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 WACQ9BTA9 647 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 KCNH6Q9H252 994 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 RNF11Q9Y3C5 154 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 CFHP08603 1231 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 SPARCP09486 303 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 CCL5P13501 91 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 BMP8BP34820 402 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 VSX2P58304 361 aaPredicted RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 EOGTQ5NDL2 527 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 DNM1P34Q6PK57 102 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 BMP8AQ7Z5Y6 402 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 COQ8AQ8NI60 647 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 CD300LFQ8TDQ1 290 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 CCDC107Q8WV48 283 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 CLEC4DQ8WXI8 215 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 SLC32A1Q9H598 525 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 PCDHB14Q9Y5E9 798 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 A0A1W2PQ45 241 aaPredicted RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 A0A1W2PQY0 241 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 SCO2O43819 266 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 CDRT1O95170 752 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 CDH1P12830 882 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 NPR2P20594 1047 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 GNG2P59768 71 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 PON2Q15165 354 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 SGCAQ16586 387 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 MYLK3Q32MK0 819 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 OR4F6Q8NGB9 312 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 C2orf15Q8WU43 125 aaKnown RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 TFGQ92734 400 aaPredicted RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 LRRC58Q96CX6 371 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 EPYCQ99645 322 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 OAZ3Q9UMX2 235 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 PCDHB3Q9Y5E6 796 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 OR1E2P47887 323 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 SOX2P48431 317 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 KLHDC10Q6PID8 442 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 SLC15A3Q8IY34 581 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 CELF5Q8N6W0 485 aaKnown RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 OR5J2Q8NH18 312 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 TMBIM1Q969X1 311 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 TMEM74Q96NL1 305 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 NUSAP1Q9BXS6 441 aaKnown RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 PIGVQ9NUD9 493 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 EDDM13A0A1B0GTR0 161 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 TCRBV21S2A2A0A5A6 115 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 SRRM3A6NNA2 597 aaPredicted RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 CXorf49A8MYA2 514 aaPredicted RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 COQ9O75208 318 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 PRPS1L1P21108 318 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 GADD45AP24522 165 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 HERV-K104P61576 105 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 COL9A3Q14050 684 aaPredicted RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 ADGRF1Q5T601 910 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 GARNL3Q5VVW2 1013 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 FRG2Q64ET8 278 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 SLC9B2Q86UD5 537 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 GLB1L3Q8NCI6 653 aaPredicted RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 BPIFB1Q8TDL5 484 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 TCEAL3Q969E4 200 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 FRG2BQ96QU4 278 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 CMKLR1Q99788 373 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 OR51I1Q9H343 314 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 DNAJC27Q9NZQ0 273 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 SERTAD3Q9UJW9 196 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 CCDC163A0A0D9SF12 145 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 A0A1B0GVI7 797 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 A6NCN8 305 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 ARPC2O15144 300 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 B3GALNT1O75752 331 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 GNAO1P09471 354 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 PVALBP20472 110 aaPredicted RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 IMPDH1P20839 514 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 PRDX6P30041 224 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 GNRHRP30968 328 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms