RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 MAPRE3Q9UPY8 281 aa18.4■□□□□ 0.54
RTN4-201ENST00000317610 CAB39Q9Y376 341 aaPredicted RBP18.4■□□□□ 0.54
RTN4-201ENST00000317610 ALPK3Q96L96 1907 aa18.4■□□□□ 0.54
RTN4-201ENST00000317610 GABRR3A8MPY1 467 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 AQP1P29972 269 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 NR4A2P43354 598 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 ASMTP46597 345 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 IDH2P48735 452 aaKnown RBP18.39■□□□□ 0.53
RTN4-201ENST00000317610 RAE1P78406 368 aaKnown RBP18.39■□□□□ 0.53
RTN4-201ENST00000317610 IRF8Q02556 426 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 ACSM2AQ08AH3 577 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 MICAQ29983 383 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 CPTPQ5TA50 214 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 ANXA8L1Q5VT79 327 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 ACSM2BQ68CK6 577 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 SAPCD2Q86UD0 394 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 IFNL1Q8IU54 200 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 NAGSQ8N159 534 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 SKA2Q8WVK7 121 aaPredicted RBP18.39■□□□□ 0.53
RTN4-201ENST00000317610 COQ8BQ96D53 544 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 SDHCQ99643 169 aaPredicted RBP18.39■□□□□ 0.53
RTN4-201ENST00000317610 CHCHD6Q9BRQ6 235 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 CDCA4Q9BXL8 241 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 THSD1Q9NS62 852 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 CEP350Q5VT06 3117 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 IGSF6O95976 241 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 HLA-EP13747 358 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 HSD3B1P14060 373 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 HSD3B2P26439 372 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 CCND3P30281 292 aaPredicted RBP18.39■□□□□ 0.53
RTN4-201ENST00000317610 NKX2-5P52952 324 aaPredicted RBP18.39■□□□□ 0.53
RTN4-201ENST00000317610 KCNC3Q14003 757 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 ELOAQ14241 798 aaKnown RBP18.39■□□□□ 0.53
RTN4-201ENST00000317610 AGAP6Q5VW22 663 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 LRRC66Q68CR7 880 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 NLRP8Q86W28 1048 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 MMAAQ8IVH4 418 aaKnown RBP18.39■□□□□ 0.53
RTN4-201ENST00000317610 LGI4Q8N135 537 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 VPS37AQ8NEZ2 397 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 AGAP4Q96P64 663 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 NIPSNAP1Q9BPW8 284 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 TMEM175Q9BSA9 504 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 CCM2Q9BSQ5 444 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 CCDC32Q9BV29 185 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 ATG10Q9H0Y0 220 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 MIR1-1HGQ9H1L0 117 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 EHD3Q9NZN3 535 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 PCDHB7Q9Y5E2 793 aa18.39■□□□□ 0.53
RTN4-201ENST00000317610 PCDH7O60245 1069 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 SERPINA4P29622 427 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 OR1D2P34982 312 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 SOX6P35712 828 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 MVDP53602 400 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 CRISP3P54108 245 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 SMAD3P84022 425 aaKnown RBP18.38■□□□□ 0.53
RTN4-201ENST00000317610 IFI44LQ53G44 452 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.38■□□□□ 0.53
RTN4-201ENST00000317610 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.38■□□□□ 0.53
RTN4-201ENST00000317610 NLGN4XQ8N0W4 816 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 CYP4Z2PQ8N1L4 340 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 CDC26Q8NHZ8 85 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 SCRN2Q96FV2 425 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 TRMT2BQ96GJ1 504 aaKnown RBP18.38■□□□□ 0.53
RTN4-201ENST00000317610 NEK6Q9HC98 313 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 ZNF282Q9UDV7 671 aaPredicted RBP18.38■□□□□ 0.53
RTN4-201ENST00000317610 CFL2Q9Y281 166 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 PPIL1Q9Y3C6 166 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 CFAP20Q9Y6A4 193 aaKnown RBP18.38■□□□□ 0.53
RTN4-201ENST00000317610 KRT87PA6NCN2 255 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 RPL17P18621 184 aaKnown RBP18.38■□□□□ 0.53
RTN4-201ENST00000317610 MAGP20916 626 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 IDSP22304 550 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 PTSQ03393 145 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 PLD1Q13393 1074 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 EXOC3L2Q2M3D2 409 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 SPANXN2Q5MJ10 180 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 Q6ZNB5 142 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 ATCAYQ86WG3 371 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 ADAMTS19Q8TE59 1207 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 NUAK2Q9H093 628 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 TPK1Q9H3S4 243 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 BRF2Q9HAW0 419 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 TMPRSS11EQ9UL52 423 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 TRAPPC4Q9Y296 219 aa18.38■□□□□ 0.53
RTN4-201ENST00000317610 A0A075B6Q4 140 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 H0YIV9 168 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 APOA1P02647 267 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 SPIBQ01892 262 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 SEMG2Q02383 582 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 LRRC74AQ0VAA2 488 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 SF1Q15637 639 aaKnown RBP18.37■□□□□ 0.53
RTN4-201ENST00000317610 TIMM50Q3ZCQ8 353 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 XKR6Q5GH73 641 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 GRHL2Q6ISB3 625 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 RFLNAQ6ZTI6 216 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 FAM217AQ8IXS0 508 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 CLIP4Q8N3C7 705 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 CELF2-AS1Q8N7Q2 184 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 B3GNT7Q8NFL0 401 aa18.37■□□□□ 0.53
RTN4-201ENST00000317610 MTERF1Q99551 399 aaKnown RBP18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms