RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 STARD8Q92502 1023 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 SORBS1Q9BX66 1292 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 GPATCH2Q9NW75 528 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 THUMPD1Q9NXG2 353 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 ZNF451Q9Y4E5 1061 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 XIRP2A4UGR9 3374 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 PSMD11O00231 422 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 GCM2O75603 506 aaPredicted RBP17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 ZBTB11O95625 1053 aaPredicted RBP17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 C6orf47O95873 294 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 C1GALT1C1LP0DN25 315 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 ADRB3P13945 408 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 HOXA9P31269 272 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 TMBIM6P55061 237 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 ZC3H12BQ5HYM0 836 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 ANXA8L1Q5VT79 327 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 B3GNT8Q7Z7M8 397 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 MMP21Q8N119 569 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 TTC29Q8NA56 475 aaPredicted RBP17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 FUNDC2Q9BWH2 189 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 TRIT1Q9H3H1 467 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 REEP1Q9H902 201 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 ERVK-18Q9QC07 812 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 GMPPBQ9Y5P6 360 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 REV3LO60673 3130 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 MAGEB3O15480 346 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 UGT2B11O75310 529 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 KLK1P06870 262 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 HNRNPA1P09651 372 aaKnown RBP eCLIP17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 ITGB7P26010 798 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 GSSP48637 474 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 GABARAPL2P60520 117 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 KCNJ10P78508 379 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 PCDH1Q08174 1060 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 ZNF763Q0D2J5 394 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 FOXD4Q12950 439 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 TMED1Q13445 227 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 VEZF1Q14119 521 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 CYP27C1Q4G0S4 372 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 BCL7AQ4VC05 210 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 MMAAQ8IVH4 418 aaKnown RBP17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 PLA2G15Q8NCC3 412 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 OR8D1Q8WZ84 308 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 POP5Q969H6 163 aaKnown RBP17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 GABARAPL1Q9H0R8 117 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 DMRT3Q9NQL9 472 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 RASSF1Q9NS23 344 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 KRT84Q9NSB2 600 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 TMEM9Q9P0T7 183 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 SPASTQ9UBP0 616 aa17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 CFAP20Q9Y6A4 193 aaKnown RBP17.63■□□□□ 0.41
SHKBP1-201ENST00000291842 ANKRD33BA6NCL7 494 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 HEPACAM2A8MVW5 462 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 TMEM229AB2RXF0 380 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 SUV39H1O43463 412 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 HOXB6P17509 224 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 PCMT1P22061 227 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 HTR1BP28222 390 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 TAS2R50P59544 299 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 C2orf80Q0P641 193 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 PRSS53Q2L4Q9 553 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 HNRNPA1L2Q32P51 320 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 TMEM240Q5SV17 173 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 ETFBKMTQ8IXQ9 262 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 SPPL2AQ8TCT8 520 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 WFIKKN2Q8TEU8 576 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 REPS1Q96D71 796 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 CNDP2Q96KP4 475 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 C7orf34Q96L11 122 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 FAM129BQ96TA1 746 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 SGPP1Q9BX95 441 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 ZCCHC2Q9C0B9 1178 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 EPHX3Q9H6B9 360 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 REEP4Q9H6H4 257 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 RUBCNLQ9H714 662 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 TRIM39Q9HCM9 518 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 TDRKHQ9Y2W6 561 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 LINC01553A4QN01 128 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 HOXC11O43248 304 aaPredicted RBP17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 MAP2K4P45985 399 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 OR1E2P47887 323 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 EMX1Q04741 257 aaPredicted RBP17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 TOP3AQ13472 1001 aaPredicted RBP17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 TUBA3CQ13748 450 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 ZNF234Q14588 700 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 IQCCQ4KMZ1 466 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 CAMKMTQ7Z624 323 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 PARP8Q8N3A8 854 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 OR5AR1Q8NGP9 310 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 SP7Q8TDD2 431 aaPredicted RBP17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 SLC5A11Q8WWX8 675 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 SMG7Q92540 1137 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 METTL2AQ96IZ6 378 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 SLC35A5Q9BS91 424 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 PLGRKTQ9HBL7 147 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 ASF1AQ9Y294 204 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 SLC27A6Q9Y2P4 619 aa17.62■□□□□ 0.41
SHKBP1-201ENST00000291842 TRIM64BA6NI03 449 aa17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 RNASET2O00584 256 aaKnown RBP17.61■□□□□ 0.41
SHKBP1-201ENST00000291842 KLHL18O94889 574 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms